Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1006 ATGGACGTTCACCGGAGAACAGTCAACGCCGTCGTCTCCGAAAAATATTCAAAAACAAAGAACCAAAAGCTTGATTCACAGTCACAATCTTCACTCTACTTAACAAACGCAATTTTCTTCGGTCTTTTCTTCTCCGTCGCGTATTTTCTTCTTCACAGGTGGCGTGAGAAGATCCGAACCTCCACACCTCTTCATGTTCTCACAATCTCTGAGATTGCCGGTGTTGTTTCCCTCATAGCTTCCTTTATTTACCTTATGGCTTTCTTCGGCATTGGCTTCATTCTTCATCCTTTCGCCGCTTCTCGCGCTGTTCAATACGACGAAGAAGATGAATCCGACATTGCGAAAAACTCCGGTTCATGCCTCGCCGGAGTCGCACAGAAGCTACCTCCGAGAATCCCCGTTGAAAAAGTTGTTCCGGCGAATTTGCCGGCACCGGTGCTACTTTCCATGGAAGATGACGAGGTTGTCCGTGCGGTGGTAACCGGTACAATTCCGTCATACTCGCTTGAATCAAAACTCGGAGATTGCAAACGTGCGGCGGCGATACGTAACCAAGCGGTGGAGAGAGTTACCGGAAAGTCACTCTCGGGTTTACCAATGGAAGGTTTTGATTATGATTCGATATTAGGACAGTGTTGTGAGATGCCGATAGGATTTGTTCAGATTCCGGTGGGAGTTGCCGGACCTTTGTTGCTTGATGGGAAAGAGTACACGGTGCCGATGGCAACGACGGAAGGTTGTTTGGTTGCAAGTACTAATAGAGGTTGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCGGTTGTCCTCCGTGATGGCATGACCAGAGCCCCCGTCGTAAGATTCAACTCCGCTAAAAGAGCTTCTCAGTTAAAGTTTTTTTTAGAAGATCCTCAAAATTTTGATTCCCTCTCTCACACTTTCAACAAGTCAAGTAGATTTGCGAGATTACAGAATATTAAAGCAACAATGGCAGGAAAGAATTTATACATTAGATTTACATGTTCAACCGGTGATGCAATGGGAATGAACATGGTATCAAAAGGTGTACAAAACGTACTTGATTTTCTTCAAAGCGATTTTCCTGATATGGATGTTATTGGTATATCAGGAAATTTTTGTTCGGATAAGAAAGCCGCGGCGGTGAATTGGATTGAAGGGAGAGGGAAATCAGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGATTAGTGTGGAGTCTTTGGTTGAGCTTAACATGTTAAAAAATCTTACTGGTTCAGCCATGGCTGGTGCTCTTGGTGGATTCAATGCACATGCTAGTAATATTGTTTCTGCTATTTACTTGGCTACAGGTCAAGATCCTGCTCAGAATGTTGAGAGTTCTCAATGTATGACCATGATGGAAGCTGTGAATGATGGCAAAGACCTTCACATCTCTGTTACTATGCCTTCCATTGAGGTGGGTACAGTTGGAGGAGGCACACAGCTTGCATCACAATCAGCTTGTTTGAATTTACTTGGTGTTAAGGGTGCTAGTAAAGAAACTCCAGGAGCAAATTCTAGGCAATTGGCAACTATTGTAGCCGGTTCAGTTCTTGCAGGAGAACTCTCACTTATGTCTGCAATTGCAGCTGGGCAGCTTGTAAAGAGCCACATGAAATACAATAGATCTAGTAAAGATGTCACCAAAGTTACTTCATGA 1704 0.4407 MDVHRRTVNAVVSEKYSKTKNQKLDSQSQSSLYLTNAIFFGLFFSVAYFLLHRWREKIRTSTPLHVLTISEIAGVVSLIASFIYLMAFFGIGFILHPFAASRAVQYDEEDESDIAKNSGSCLAGVAQKLPPRIPVEKVVPANLPAPVLLSMEDDEVVRAVVTGTIPSYSLESKLGDCKRAAAIRNQAVERVTGKSLSGLPMEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASAVVLRDGMTRAPVVRFNSAKRASQLKFFLEDPQNFDSLSHTFNKSSRFARLQNIKATMAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKISVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSQCMTMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKETPGANSRQLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVTKVTS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1006 567 Gene3D - 274 390 IPR009023 -
Mtr5g1006 567 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 274 390 IPR009023 -
Mtr5g1006 567 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 153 557 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 488 495 IPR023076 GO:0004420
Mtr5g1006 567 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 138 546 IPR009029 GO:0015936|GO:0016616
Mtr5g1006 567 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 151 557 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mtr5g1006 567 Gene3D - 149 223 IPR023282 GO:0004420
Mtr5g1006 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 542 555 IPR023076 GO:0004420
Mtr5g1006 567 Gene3D - 224 544 IPR023074 GO:0004420
Mtr5g1006 567 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 5 567 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 CDD HMG-CoA_reductase_classI 154 557 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mtr5g1006 567 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 5 567 - -
Mtr5g1006 567 Pfam Hydroxymethylglutaryl-coenzyme A reductase 181 557 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 213 234 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 240 260 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 331 349 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 371 396 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 422 448 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 476 497 IPR002202 GO:0004420|GO:0015936
Mtr5g1006 567 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 333 347 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1006 Mtr-Chr5 10065870 10069073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1006 32 563 Lipid Metabolism Gene Families AT1G76490 71.140 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1006 K00021 - gmx:100790033 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1006 5 10065870 10069073 Mtr8g2287 8 33167767 33171417 ECH
Mtr5g1006 5 10065870 10069073 Mtr5g1006 5 10065870 10069073 ECH
Mtr5g1006 5 10065870 10069073 Mtr8g2287 8 33167767 33171417 PCT