Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1954 ATGGCTGCTGCAGAGAGTACGGTGGAACTGGAGTCCTCCATGAAGAGACAAAGAGATGATGAAGAAGAGAATAATGGGGTTTCTGTTTCAACAATGGATGTTGAAGGTGGTGATGATAAGGACCCAAATGGTAATGGTGTTTCATCTGTGATTCCTGGGTGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTATTTCAAGGAAATTCAGATTACCAGAAAGTCATGGTCTTCCAGTCATCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTTCTAACCCCAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGAGTCCTGCGAGAAGTAGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTTTCCAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAATGATCCACGTGTGACTCTTCGCATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGATCCTATTGGTCCTGCTCAGGAGCTTTTCGAAAAGCCATTTTTTCAGTCAGTGGCAAGGGCTCTTCGTCCAGGAGGAGTTATGTGCACTCAGGCTGAAAGTATATGGCTTCATATGGATATAATTGAGAACATTGTGTCCAATTGTCGTGAGATTTTCAAAGGCTCTGTCAATTATGCTTGGACTACAGTTCCTACATATCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGAGCTCTTGTTGATTTCAAACATCCAGTGAATCCTATGGATGAAAACGAATGTCAGAAGTCAGTAAGACCACTCAAATTTTACAACTCTGAGATTCATACTGCAGCTTTCTGTTTGCCGTCATTTGCGAAGAGGAAGATTGGTTCCAAAGAAAACTGA 1029 0.414 MAAAESTVELESSMKRQRDDEEENNGVSVSTMDVEGGDDKDPNGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGNSDYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIENIVSNCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGALVDFKHPVNPMDENECQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKEN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1954 342 Gene3D Spermidine synthase, tetramerisation domain 46 104 IPR037163 -
Mtr8g1954 342 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 131 144 IPR030373 -
Mtr8g1954 342 PANTHER SPERMIDINE SYNTHASE-RELATED 3 342 - -
Mtr8g1954 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 337 IPR029063 -
Mtr8g1954 342 Gene3D Vaccinia Virus protein VP39 105 342 IPR029063 -
Mtr8g1954 342 Hamap Polyamine aminopropyltransferase [speE]. 53 338 IPR001045 GO:0003824
Mtr8g1954 342 PIRSF Spermidine_synth 43 342 IPR030668 GO:0006595
Mtr8g1954 342 CDD AdoMet_MTases 130 241 - -
Mtr8g1954 342 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 342 IPR001045 GO:0003824
Mtr8g1954 342 Pfam Spermine/spermidine synthase domain 110 297 - -
Mtr8g1954 342 MobiDBLite consensus disorder prediction 1 46 - -
Mtr8g1954 342 TIGRFAM speE: spermidine synthase 54 332 IPR001045 GO:0003824
Mtr8g1954 342 MobiDBLite consensus disorder prediction 11 25 - -
Mtr8g1954 342 Pfam Spermidine synthase tetramerisation domain 53 107 IPR035246 -
Mtr8g1954 342 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 289 IPR030374 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1954 Mtr-Chr8 29302847 29309159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1954 K00797 - gmx:100776863 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1954 8 29302847 29309159 Mtr8g1954 8 29302847 29309159 ECH
Mtr5g1418 5 14864158 14869268 Mtr8g1954 8 29302847 29309159 PCT