Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1418 ATGGCGGCAGCACCAGAAAACACCACCCTTCTTGAGTCCACAGATTTTCCCTTGAAGAGGCAAAGAGAAGAAGAAGATGAAGATCAATTACCTCACAACGGTTTCTCTGAAACTGTTCCAAAAGACCCTCAACCAAATGGTTTATCTTCTGTTATTCCTGGCTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAATCTGATTATCAGAATGTTATGGTCTTCCAGTCAGCAACATATGGCAAGGTTCTTGTTTTGGATGGGGTCATTCAGCTCACGGAAAGGGATGAGTGTGCGTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCAATTCCAAACCCCAAAAAGGTTTTGGTCATTGGTGGAGGAGATGGGGGAGTCCTGAGGGAAGTTTCACGCCATGCTTCAGTTGAAAAGATAGACATTTGTGAAATAGACAAGATGGTTGTCGATGTCTCCAAACAATTTTTCCCTGATATAGCAGTAGGTTTTGAAGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTTTTGAAGGCAGCCCCAGAAGGAACTTATGATGCAGTTATTGTGGATTCATCTGATCCTATCGGTCCTGCTCAAGAGCTTTTCGAAAAGCCCTTTTTTGAGTCGGTTGCAAGGGCTCTTCGTCCAGGAGGTGTTGTATGCACTCAGGCAGAAAGTATATGGCTTCATATGCATATCATCGAGGACATCGTAGTGAATTGTCGCCAAGTATTCAAAGGCTCTGTCAATTATGCCTGGACCACGGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTTCGGTCGATTTCAAGCATCCGGTGAATCCTATTGATGAGAATGATAGCCAGCATGCTGGAAGACCATTGAAATTTTACAACTCTGAGATCCATTCAGCAGCTTTCTGTTTGCCATCTTTTGCCAAGAGAGCAATTGCTTCTAAATCAAATTGA 1032 0.439 MAAAPENTTLLESTDFPLKRQREEEDEDQLPHNGFSETVPKDPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLHIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQHAGRPLKFYNSEIHSAAFCLPSFAKRAIASKSN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1418 343 Hamap Polyamine aminopropyltransferase [speE]. 54 339 IPR001045 GO:0003824
Mtr5g1418 343 Pfam Spermine/spermidine synthase domain 111 298 - -
Mtr5g1418 343 MobiDBLite consensus disorder prediction 16 32 - -
Mtr5g1418 343 CDD AdoMet_MTases 131 242 - -
Mtr5g1418 343 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Mtr5g1418 343 Gene3D Spermidine synthase, tetramerisation domain 47 105 IPR037163 -
Mtr5g1418 343 MobiDBLite consensus disorder prediction 1 46 - -
Mtr5g1418 343 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Mtr5g1418 343 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Mtr5g1418 343 PIRSF Spermidine_synth 44 343 IPR030668 GO:0006595
Mtr5g1418 343 Gene3D Vaccinia Virus protein VP39 106 343 IPR029063 -
Mtr5g1418 343 PANTHER SPERMIDINE SYNTHASE-RELATED 17 343 - -
Mtr5g1418 343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 338 IPR029063 -
Mtr5g1418 343 TIGRFAM speE: spermidine synthase 55 333 IPR001045 GO:0003824
Mtr5g1418 343 PANTHER SPERMIDINE/SPERMINE SYNTHASE 17 343 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1418 Mtr-Chr5 14864158 14869268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1418 K00797 - gmx:100792107 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1418 5 14864158 14869268 Mtr5g1418 5 14864158 14869268 ECH
Mtr5g1418 5 14864158 14869268 Mtr8g1954 8 29302847 29309159 PCT