Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1900 ATGAAAAAACAACAACTTATCTTCCCTCTCACAATTTCATTCTCTCTCACTCTCCTCATTGTTTCAGCTCGTCTATTTCCCGACGTCCCCTCTTGGATACCTCCCGGCACTCTCCCGGTAGGCCCGTGGGATGCCTTTCGCAATTTCACCGGCTGCCGTCAAGGCGAAAACTACAACGGCCTCTCTAATTTAAAGAACTATTTCCAACACTTCGGTTACATTCCCCGCTCGCCAAAATCAAATTTCTCCGATGACTTCGACGATGATCTCCAAGAAGCAATTAAAACCTACCAGAAGAATTTTAATCTCAATGTAACCGGTGAGCTCGACGACATGACTCTCCGGCAGGTCATGCTACCACGTTGCGGCGTAGCGGATATTATTAACGGTACAACTACCATGAACGCCGGCAAGGACACAGAAACAACGTCAAACAGTGACAGCAAGCTAAGGTTCCATACAGTATCACACTTCACCGTGTTTCCCGGTCAACCAAGGTGGCCGGAGGGAAAGCAGGAACTAACCTACGCGTTCTTCCCCGGTAACGAACTTACAGAAACCGTGAAAAGCGTCTTCGCAACAGCGTTTGCACGATGGTCGGAGGTCACCACGCTGAAATTCACCGAAACAACGTTATATTCCGGCGCTGATATTAAGATCGGATTCTTCAACGGCGACCATGGAGACGGCGAGCCGTTTGACGGAAGCTTGGGAACGCTAGCGCATGCTTTCTCTCCAAGGAACGGGAGGTTTCACCTTGACGCTGCAGAGGACTGGGTAGTTTCCGGCGATGTGTCGAAGTCGTCGTTACCAACTGCGGTTGATTTAGAATCAGTGGCGGTGCATGAGATTGGGCACTTGTTAGGATTAGGTCACTCATCGGAGGAGGAAGCGATAATGTTTCCGACGATATCGTCACGGATGAAGAAAGTAGTGCTGGCTGACGATGATGTAAGGGGAATTCAATATTTATATGGTACTAACCCTAGTTTCAATGGCTCCACCGTCATATCGTCACCGGAGAGGAATATCGGCAACGGTGGTTGCAGCCTCACTTCTTTGTGGTCCCCGTGGAGACTTTTCTCTCTGTTGACTTTTGTATTATCACATTTCTTGCTATAG 1122 0.4875 MKKQQLIFPLTISFSLTLLIVSARLFPDVPSWIPPGTLPVGPWDAFRNFTGCRQGENYNGLSNLKNYFQHFGYIPRSPKSNFSDDFDDDLQEAIKTYQKNFNLNVTGELDDMTLRQVMLPRCGVADIINGTTTMNAGKDTETTSNSDSKLRFHTVSHFTVFPGQPRWPEGKQELTYAFFPGNELTETVKSVFATAFARWSEVTTLKFTETTLYSGADIKIGFFNGDHGDGEPFDGSLGTLAHAFSPRNGRFHLDAAEDWVVSGDVSKSSLPTAVDLESVAVHEIGHLLGLGHSSEEEAIMFPTISSRMKKVVLADDDVRGIQYLYGTNPSFNGSTVISSPERNIGNGGCSLTSLWSPWRLFSLLTFVLSHFLL* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1900 373 CDD ZnMc_MMP 166 326 IPR033739 GO:0008237|GO:0008270
Mtr8g1900 373 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g1900 373 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g1900 373 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g1900 373 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g1900 373 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr8g1900 373 PANTHER MATRIX METALLOPROTEINASE 28 350 - -
Mtr8g1900 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 330 - -
Mtr8g1900 373 Pfam Matrixin 170 326 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mtr8g1900 373 PANTHER MATRIX METALLOPROTEINASE 28 350 - -
Mtr8g1900 373 SUPERFAMILY PGBD-like 64 127 IPR036365 -
Mtr8g1900 373 SMART col_5 163 327 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mtr8g1900 373 Pfam Putative peptidoglycan binding domain 59 116 IPR002477 -
Mtr8g1900 373 Gene3D Collagenase (Catalytic Domain) 49 331 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1900 Mtr-Chr8 28756251 28757514 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1900 - - gmx:100784544 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1900 8 28756251 28757514 Mtr8g1900 8 28756251 28757514 ECH
Mtr5g1483 5 15747511 15748823 Mtr8g1900 8 28756251 28757514 PCT