Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1483 ATGCATATAATAGATACACTCAGTTATGTTTGTTCATTAACCAAAATGATGAAATTATATCAATTTGAATTTTTCTTATTCCTTCTTATCATTGTCAATACAACCCTTTCCAGTTCTTTCCCTACACTCTCTCAATTTGCGAAACCATTGGAGTATATTAAGAAAACAACGGAAGCTGCTGACTATATATGGGATAAGAAAATAAAGAAGTTGGTCGAGGACTTAAAAGACAAGAACTTGAAAAATATCAAACCGTCCCTTCCATCACAATTACCAAAATACAAAGGTGTAGATCAAATCAAACAATATTTGTCCGATTTCGGCTACCTCGAACAATCTGGGCCGTTCAATAACACTCTAGACCAAGAAACAGTCTTAGCCCTTAAGACCTACCAACGATATTTCAATATCCAACAAGATACTCTCAGCGAAATTCTCCAACATATAGCATTACCACGATGCGGTGTTCCTGATAGGATTTTGAAGTACAACTTAACCAATGATATATCTTTTCCGAAAGGAAACCAATGGTTTCCTAAGGGAACGAAAAATCTTACCTACGGTTTTGATCCCAGGAATAAAATCCCACTCGACATGACCAACGTGTTTAGAACAGCCTTGACACAATGGTCGAACACCACTAGGGTCTTAAATTTTACAGAGACGAAATCATACGATGATGCTAACATTAAGATTGGATTCTACAATATAACTGACGATGATGGGATCAACGATGTTGCCGTGGGTTTCACTTTTATCGTACTTGATTCAACGAATGTGAAGTCGGGTTTTATAACTCTGGACGCTACAAAGTACTGGGCGTTGCCAACTGAGCACAGAGGATTTGATTTGGAGACGGCCGCGATGCATCAGATAGGTCATCTGCTAGGACTTGAACATTCTTCTGATAACAAGTCTATCATGTATCCAACTATATTGCCATCACATCAAAAGAATGTGCAGATAACAGATTCTGATAACTTAGCAATCCAAAAACTCTATTCCAGCTCTACTAAAGCCAATGCAAACTCAGATGATAGTAGTGGGTGCTTTAAACTTTTTGGGTCTAGTTCTAGCCTCTTAATCTCTTTGTCCATTGTATTTGCTTTTGTGGCTCTGTTGAACTAG 1128 0.3785 MHIIDTLSYVCSLTKMMKLYQFEFFLFLLIIVNTTLSSSFPTLSQFAKPLEYIKKTTEAADYIWDKKIKKLVEDLKDKNLKNIKPSLPSQLPKYKGVDQIKQYLSDFGYLEQSGPFNNTLDQETVLALKTYQRYFNIQQDTLSEILQHIALPRCGVPDRILKYNLTNDISFPKGNQWFPKGTKNLTYGFDPRNKIPLDMTNVFRTALTQWSNTTRVLNFTETKSYDDANIKIGFYNITDDDGINDVAVGFTFIVLDSTNVKSGFITLDATKYWALPTEHRGFDLETAAMHQIGHLLGLEHSSDNKSIMYPTILPSHQKNVQITDSDNLAIQKLYSSSTKANANSDDSSGCFKLFGSSSSLLISLSIVFAFVALLN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1483 375 Pfam Matrixin 182 334 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mtr5g1483 375 Gene3D Collagenase (Catalytic Domain) 89 342 IPR024079 GO:0008237
Mtr5g1483 375 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 182 334 - -
Mtr5g1483 375 SUPERFAMILY PGBD-like 92 158 IPR036365 -
Mtr5g1483 375 SMART col_5 174 336 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mtr5g1483 375 PRINTS Matrixin signature 149 162 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1483 375 PRINTS Matrixin signature 203 218 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1483 375 PRINTS Matrixin signature 287 312 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1483 375 PRINTS Matrixin signature 322 335 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mtr5g1483 375 PANTHER MATRIX METALLOPROTEINASE 92 336 - -
Mtr5g1483 375 Pfam Putative peptidoglycan binding domain 96 140 IPR002477 -
Mtr5g1483 375 PANTHER MATRIXIN PROTEIN 92 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1483 Mtr-Chr5 15747511 15748823 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1483 - - mtr:MTR_5g036290 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1483 5 15747511 15748823 Mtr8g1900 8 28756251 28757514 PCT