Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1870 ATGAACAAACTGAAACTAAACCCATTTTCACTCTTTCCAAATAGACCTAAACTTCTTCATATTTTCATGCTTCTTATGCTTTTTTATTTGCTCTTCACAACCTTTGAAATCAAAACTTTTGAGTTTGTTTCAGTTTCTTCTGTGCTTGTGAATGAAAACCAAAACACCCATCATAGAAAAGCTTTGAACTTTCCTTCAGAAGAAGCTTTTGGTGTTTACCAAGGTTCATTACATAGAAAACCAATGCAAGAGTTGCAAAAAGTTTCCACCTTGAGTTTCAATGAAGGTGATTTGAATGAATCTGGTTTAGAAAAAGACAAATTTTCTGAGATTCAAAAGGCTGTTAAGGTTGCTTGGGTTAAAGGGAAGAAAATGTGGGAAGAAATTCAGTTTCAGAGTGTTGAAACTGTGAATGTTGCTGAGAATATTTCTGATTCGTGTCGGCATTCGATTTCGGTATCTGGGTCTGAATTAAGGAACCAGAATGGGATTATGATGATTCCTTGTGGGTTGACTTTGTGGTCTCATGTTACTATTGTTGGGACGCCGCGATTGGCTCATTGGGAGGATGATCCTAAGATAACTATTGTGAAAGATGAGGATGAAAAGGTGTTAGTGTCACAGTTTATGATGGAGCTTCAAGGATTGAAGGTAGTTGATAAGGAGGAACCACCTAAGATACTGCATTTTAATCCTAGGTTGAAAGGCGATTATAGTGGGAAGCCGGTGATTGAGCAGAATACTTGTTATAGAATGCAATGGGGTTCTTCACTTAGGTGTGAGGGATGGAAGTCTAGGGCTGATGAAGATACTGTTGATGGACAGTTGAAATGTGAAAAGTGGATCCGCGATGATGATAGCCATTCAGAAGAGTCTAAGGCAACATGGTGGTTACCTAGACTGATAGGGCGAAAACACAAGATCACTTTTGATTGGCCATACCCTTTTATAGAGGGCAGATTATTTGTTCTCACCTTAACTGCTGGCTTGGAAGGTTACCATGTTAGTGTGGACGGAAAGCATGTTACCTCTTTTCCTTATCGCACGGGATTCTCTCTTGAGGATGCTACAGGTCTATCTATAAAAGGGGATATTGATGTGCACTCTGTATATGCTGCTTCGTTACCAACATCACATCCAAGTTTTGCGCCACAGATGCATCTCGAATTGCTTCCTCAATGGAAAGCTCCACCTATTCTCGATGTGAATGTCGAGCTTTTCATTGGAATACTTTCTGCTGGAAACCATTTTGCCGAACGAATGGCAGTAAGGAAATCGTGGATGCAACATAAGCTAATCAAATCTTCACATGCTGTAGCTCGATTCTTTGTTGCTTTGCATGCAAGGAAAGATATAAATTTGGACATAAAGAAAGAAGCAGATTATTTTGGTGATATTATTATAGTCCCATATATGGATCATTATGACCTTGTTGTGGTGAAGACTGTAGCTATCGCTGAATATGGGATTCGTACTGTTGCTGCTAAGAATATCATGAAATGTGATGATGACACGTTTGTTCGATTGGATTCTATCATCAGTGAAGTAAGAAAAGTAGGAATTGGCAAAAGTCTCTACATTGGTAATATGAATTACCACCATACGCCCCTTCGCCATGGTAAATGGGCAGTCACATATGAGGAATGGGCGGAAGAAGAGTATCCTACCTATGCTAATGGTCCAGGTTATATAATCTCATCAGACATTGCTCAGTTCATTGTATCGAACTTTGAGGAGCACAAATTAAAATTATTTAAAATGGAGGACGTAAGCATGGGAATGTGGGTAGAGCAATTCAAGAGTTCACGACCAGTTGAGATTGTGCACAGCTACAAGTTCTGCCAATTTGGGTGCATTGAAGGTTACTTCACTGCACATTATCAATCTCCAAGACAAATGACATGTATGTGGGATAAATTGCAACACAAAGGAAAACCACTATGTTGCAACAACAGATGA 1959 0.3936 MNKLKLNPFSLFPNRPKLLHIFMLLMLFYLLFTTFEIKTFEFVSVSSVLVNENQNTHHRKALNFPSEEAFGVYQGSLHRKPMQELQKVSTLSFNEGDLNESGLEKDKFSEIQKAVKVAWVKGKKMWEEIQFQSVETVNVAENISDSCRHSISVSGSELRNQNGIMMIPCGLTLWSHVTIVGTPRLAHWEDDPKITIVKDEDEKVLVSQFMMELQGLKVVDKEEPPKILHFNPRLKGDYSGKPVIEQNTCYRMQWGSSLRCEGWKSRADEDTVDGQLKCEKWIRDDDSHSEESKATWWLPRLIGRKHKITFDWPYPFIEGRLFVLTLTAGLEGYHVSVDGKHVTSFPYRTGFSLEDATGLSIKGDIDVHSVYAASLPTSHPSFAPQMHLELLPQWKAPPILDVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSHAVARFFVALHARKDINLDIKKEADYFGDIIIVPYMDHYDLVVVKTVAIAEYGIRTVAAKNIMKCDDDTFVRLDSIISEVRKVGIGKSLYIGNMNYHHTPLRHGKWAVTYEEWAEEEYPTYANGPGYIISSDIAQFIVSNFEEHKLKLFKMEDVSMGMWVEQFKSSRPVEIVHSYKFCQFGCIEGYFTAHYQSPRQMTCMWDKLQHKGKPLCCNNR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1870 652 Gene3D - 162 371 - -
Mtr8g1870 652 SUPERFAMILY Concanavalin A-like lectins/glucanases 165 371 IPR013320 -
Mtr8g1870 652 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 6 652 - -
Mtr8g1870 652 Gene3D - 402 638 - -
Mtr8g1870 652 Pfam Galactosyltransferase 419 600 IPR002659 GO:0006486|GO:0016020|GO:0016758
Mtr8g1870 652 Pfam Galactoside-binding lectin 164 371 IPR001079 GO:0030246
Mtr8g1870 652 CDD GLECT 167 370 IPR001079 GO:0030246
Mtr8g1870 652 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 652 IPR002659 GO:0006486|GO:0016020|GO:0016758
Mtr8g1870 652 SMART Gal_bind_lectin_2 167 372 IPR001079 GO:0030246
Mtr8g1870 652 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 163 373 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1870 Mtr-Chr8 28370239 28375303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1870 5 652 Glycosyltransferase AT1G74800 57.949 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1870 K20843 - gmx:100814480 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1870 8 28370239 28375303 Mtr8g1870 8 28370239 28375303 ECH
Mtr5g1517 5 16225809 16231399 Mtr8g1870 8 28370239 28375303 PCT