Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0449 ATGAGCGGTGGCGATGAGGTTGTTGTAGCTCCGGAGGAACCAGTGCAACCGTTGGAGTGGAAATTCTCGCAGGTTTTTGGTGAACGTGCGGCTGGAGAGGAAGTTCAGGAAGTGGACATAATATCTGCTATTGAATTCGACAAGTCTGGTGATCATCTTGCGACCGGTGATCGTGGTGGCCGAGTAGTTCTCTTTGAGCGGACAGATTCAAAAGATCATGGATCAAGAAGTGATTTGGAGAGGATGGACTATTCTGTTAATAGGCATCCCGAGTTCCGTTACAAAACCGAGTTTCAGAGTCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGCCAAACAGCTAACGGGGCTGTATTCCTTCTATCTACAAACGACAAAACAATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTGAAGAAAATTTCTGACATGAATATTGACTCTTCAAAAGCAACGGGAAATGGATCTATTGCTAGTTCAAGTAATTCCAGTAGCTCTAAGCCACATCTTGCAAATGGAGGACCTTCAGATAAATCATATAGCTATCTAAGCAATGATTTCTCATTTCCACCTGGAGGCCTACCTTCGCTAAAATTACCCTCGGTAGTTAGCCATGAGACCAGTCTGTTGGCTCGTTGTCGTAGAGTATATGCACATGCTCATGACTATCACATCAATTCTATTTCAAATAACAGCGATGGAGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACTTAGAAATTAGCAGTCAAAGTTTTAATATAGTCGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGCTCAAAGGGCTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCTTTATGCGATTCTCATGCCAAATTATTTGAGGAACAGGAGGCCCCTGGGTCCAGATCCTTTTTCACTGAGATTATTGCTTCTATCTCAGATATAAAATTTGCAAAGGATGGAAGATATATACTTAGTCGCGATTACATGACTCTGAAGTTATGGGACATAAATATGGATTCTGGCCCAGTTGCAACTTACCGTGTTCACGAGCATTTAAGGCCAAGGCTATGTGATTTATACGAAAACGATTCAATTTTTGATAAGTTTGAATGTTGTCTCAGTGGTGATGGATCACGTGTTTCAACCGGGTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGCCCCTGGAAGTACTGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGACAAGTTCCAACGCCTTCAAGGCCTTCTAGATCAATCGGGAACAGCATCACAAGAGTTGTAAGACGCGGAGCTGAGAACACCGGTGTCGACGCAAATGGAAATTCTTTTGATTTCACAACAAAGTTACTACACTTAGCATGGCACCCAAGTGAAAACTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGTACTATGCATGA 1545 0.4155 MSGGDEVVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSKDHGSRSDLERMDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKATGNGSIASSSNSSSSKPHLANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVVSHETSLLARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSIGNSITRVVRRGAENTGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0449 514 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Mtr8g0449 514 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 514 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 231 245 IPR018067 -
Mtr8g0449 514 SUPERFAMILY WD40 repeat-like 39 506 IPR036322 GO:0005515
Mtr8g0449 514 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 104 118 IPR018067 -
Mtr8g0449 514 Gene3D - 34 198 IPR015943 GO:0005515
Mtr8g0449 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 3 514 - -
Mtr8g0449 514 SMART WD40_4 331 369 IPR001680 GO:0005515
Mtr8g0449 514 SMART WD40_4 272 312 IPR001680 GO:0005515
Mtr8g0449 514 SMART WD40_4 222 261 IPR001680 GO:0005515
Mtr8g0449 514 SMART WD40_4 104 144 IPR001680 GO:0005515
Mtr8g0449 514 SMART WD40_4 31 66 IPR001680 GO:0005515
Mtr8g0449 514 PIRSF PPA2_B55 10 514 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 Gene3D - 209 512 IPR015943 GO:0005515
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 91 119 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 120 148 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 233 260 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 261 288 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 289 317 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 318 345 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 346 373 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 399 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 400 426 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 483 512 IPR000009 GO:0000159|GO:0019888
Mtr8g0449 514 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0449 Mtr-Chr8 5204248 5212922 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0449 K04354 - gmx:100799449 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0449 8 5204248 5212922 Mtr2g3515 2 49235376 49243419 ECH
Mtr8g0449 8 5204248 5212922 Mtr8g0449 8 5204248 5212922 ECH
Mtr2g3515 2 49235376 49243419 Mtr8g0449 8 5204248 5212922 PCT