Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3515 ATGAACGGTGGTGATGATGTTGTTGCAGCAGCTCCGGCGGGTCCACCGGTTCCGTTGGAGTGGAAATTCTCTCAGGTCTTTGGTGAACGTACGGCTGGTGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATCGAATTTGACAAGTCTGGTGATCATCTTGCTACCGGTGATCGTGGTGGTCGAGTGGTACTCTTTGAGAGGACAGATACAAAAGATCATGGCGAATCTAGAAGGGATTCAGAGAGGATGGACTATTCTATCAGCAGGCATCCTGAATTCCGTTACAAAACAGAGTTTCAGAGTCACGAGCCTGAGTTTGACTACCTTAAGAGTTTGGAGATAGAAGAGAAAATCAACAAAATCAGATGGTGCCAAATAGCTAATGGTGCCCTTTTCCTTCTCTCGACAAATGATAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAGTTGCTGAGATGAATGTTGACCCTTCAAAAACAATGGGAAATGGCAGTATTGCTAGTTCAAGTAATTCAAGTAATCCTAGGCCAAACCTTGAAAATGGAGGATATCCAGATTCAGATAGATCATACAATTATCTCAGCCCTGACTTCTCATTTCCACCAGGAGGCATACCGTCACTAAGATTACCAGTGGTAGTAAGTAGCCATGAAACCAGCTTGGTGGCTCGATGTCGTAGAGTTTATGCGCATGCTCACGATTATCATATCAATTCAATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCCGATGATTTGCGAATAAATCTCTGGAACCTGGAAATAAGCAGTCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATCTGACAGAGGTTATAACATCAGCAGAGTTCCACCCTACACATTGTAATACGTTGGCGTATAGCAGTTCAAAGGGTTCAATCCGTCTAATTGATTTGCGGCAATCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAAGAGGCCCCAGGATCCAGATCATTTTTCACAGAGATAATTGCTTCTATATCTGACATAAAATTTGGGAAAGATGGAAGATACATACTGAGCCGCGATTACATGACTTTAAAGTTGTGGGACATCAATATGGATTCAGGTCCAGTTGCAACTTATCAGGTTCATGAGTATCTAAGACCTAAGCTTTGTGATTTATATGAAAACGATTCAATATTTGATAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGAGTAGCAACTGGTTCTTACAGCAATTTATTTCGAGTATTTGGCTGTGCTCCTGGAAGTACTGAAGCTACAACTTTGGAAGCCAGTAAAAACCCAATGAGACGACAAGTTCCGACCCCCTCAAGGCCGTCTCGATCACTGGGAAATAGTATAACACGAGTTGTACGACGGGGAGCAGAAAACCCTGGGGTTGATGCAAACGGGAATTCGTTTGATTTCACGACAAAGTTATTGCACTTAGCATGGCATCCATCTGAAAATTCAATCGCCTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1560 0.4199 MNGGDDVVAAAPAGPPVPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESRRDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTNDKTIKFWKVQEKKVKKVAEMNVDPSKTMGNGSIASSSNSSNPRPNLENGGYPDSDRSYNYLSPDFSFPPGGIPSLRLPVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAENPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3515 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 236 250 IPR018067 -
Mtr2g3515 519 Gene3D - 226 325 IPR015943 GO:0005515
Mtr2g3515 519 PIRSF PPA2_B55 15 519 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Mtr2g3515 519 MobiDBLite consensus disorder prediction 446 465 - -
Mtr2g3515 519 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 1 519 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 SUPERFAMILY WD40 repeat-like 40 511 IPR036322 GO:0005515
Mtr2g3515 519 Gene3D - 37 181 IPR015943 GO:0005515
Mtr2g3515 519 Gene3D - 326 515 IPR015943 GO:0005515
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 46 66 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 93 121 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 122 150 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 238 265 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 266 293 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 323 350 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 351 378 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 379 404 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 405 431 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 488 517 IPR000009 GO:0000159|GO:0019888
Mtr2g3515 519 MobiDBLite consensus disorder prediction 163 185 - -
Mtr2g3515 519 SMART WD40_4 227 266 IPR001680 GO:0005515
Mtr2g3515 519 SMART WD40_4 106 146 IPR001680 GO:0005515
Mtr2g3515 519 SMART WD40_4 336 374 IPR001680 GO:0005515
Mtr2g3515 519 SMART WD40_4 277 317 IPR001680 GO:0005515
Mtr2g3515 519 SMART WD40_4 32 67 IPR001680 GO:0005515
Mtr2g3515 519 MobiDBLite consensus disorder prediction 159 191 - -
Mtr2g3515 519 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 106 120 IPR018067 -
Mtr2g3515 519 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B 1 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3515 Mtr-Chr2 49235376 49243419 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3515 K04354 - gmx:100799449 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0449 8 5204248 5212922 Mtr2g3515 2 49235376 49243419 ECH
Mtr2g3515 2 49235376 49243419 Mtr2g3515 2 49235376 49243419 ECH
Mtr2g3515 2 49235376 49243419 Mtr8g0449 8 5204248 5212922 PCT