Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0402 ATGTTTTCGTTTTCTGTCTCTCGTTTCCCTTCAGCACAATCATTGTCACTCCATCACCCATCAACAACAACAAACGCAACTTTTCACACCAACCCACTACACCAAAACGCTTCATCTTCTACCAACAACAACAAAGCTGAAAACTTTCTCAAACAAAACGCCACTAGCAGAGTAAACCCAATTGAGGGTAATGAAAACGAGGTTGTATTTGGAAGAAAGAAGAAAAAGGGTAAGGAAAAAGTTTACTGGGTTTGTAGCGATTGTGGGTATAGTACTGGACAATGGTGGGGTGTTTGTAGATCGTGTAGTGTTTCTGGTACTATGAAAGAGTTTCATGAAGTGAAAAGTAGTGAAAAGGTTAGTGGGTTTTCAGTTTTGGAAGATGGGTTGGGGTCTTGGCTTCCCGAGAAGAGTGGCGAGTTGCGTCCTTTGAGATTGTCTGAGGTTAATAGGGGAGTTGATCATTTGCATTGGAGAATTCGTTTGTCTGGTCCTTTTGGAAATGAAGTTTCTAGAGTGCTTGGTGGTGGTCTTGTACCAGGTTCATTGACTTTAGTTGGCGGGGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGGTTGCTGCCATGCTTGCCGAAGGCGACGAAGATGTTGGAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGACCGCCTAACAATCGGATCAGATATTTATTTATATTCAAGTAATGATATCGAGGACATATTGAAGAAAGTTCAGTATATCTCCCCTCGGGCACTAGTTGTTGATTCTGTACAAACTGTTTATTTGAAAGGAATAATGGGGAGTCCTGGAGGGATTATGCAGGTGAAGGAATGTACTTCGGCTTTACTTCGATTTGCAAAGACAACAAACATCCCGGTTCTATTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACACTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCGAATGCCAGTGAAATGTTTCTTAGTGAGCAAGACCTAGATTCAGATGTTTTAGCTGGACTCGCTGTAGCTGTAATAATGGATGGATCCCGAACATTTCTTATTGAAATTCAGGCGCTTTGTCTCTCTGGTTCAACAGGATCAAGGCAATTTAATGGTATCCAAGCAAATAGAGCGGATATGATCATATCTGTTCTTATCAAGCAAGCAGGACTTCGTCTCCAAGAACATGCTGTGTTTTTAAATGTTGTTAGTGGATTGACAGTGACCGAGACTGCAGGAGATCTTGCAATAGCAGCTGCCATTTGCAGCAGTTGTTTGGAGCTCCCGATTCCAAATGACATTGCATTCATTGGTGAAATTGGTCTTGGTGGCGAGCTTCGAATGGTTACTAGAATGGAAAAAAGGGTACACACAGTAGCAAAATTGGGTTACAGAATGTGTATAATACCAAAGGCAGCTGAAAAAGTTTTGGGAACTGAAGGTCTAGAAAATATCAAAGTTGTTGGTTGCAGGAATCTGAAGGACGTTATCAACACTATATTTCCTAATGTGATGAGAAGAAGCAAGTAA 1686 0.4193 MFSFSVSRFPSAQSLSLHHPSTTTNATFHTNPLHQNASSSTNNNKAENFLKQNATSRVNPIEGNENEVVFGRKKKKGKEKVYWVCSDCGYSTGQWWGVCRSCSVSGTMKEFHEVKSSEKVSGFSVLEDGLGSWLPEKSGELRPLRLSEVNRGVDHLHWRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQVAAMLAEGDEDVGASPVVYVSGEESVEQIGNRADRLTIGSDIYLYSSNDIEDILKKVQYISPRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQDLDSDVLAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTVTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMVTRMEKRVHTVAKLGYRMCIIPKAAEKVLGTEGLENIKVVGCRNLKDVINTIFPNVMRRSK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0402 561 Gene3D - 387 560 IPR014721 -
Mtr8g0402 561 SMART AAA_5 180 338 IPR003593 -
Mtr8g0402 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 363 IPR027417 -
Mtr8g0402 561 MobiDBLite consensus disorder prediction 15 44 - -
Mtr8g0402 561 SUPERFAMILY Ribosomal protein S5 domain 2-like 349 553 IPR020568 -
Mtr8g0402 561 Pfam AAA domain 173 316 - -
Mtr8g0402 561 Pfam Subunit ChlI of Mg-chelatase 434 524 - -
Mtr8g0402 561 Gene3D - 169 369 IPR027417 -
Mtr8g0402 561 TIGRFAM sms: DNA repair protein RadA 78 548 IPR004504 GO:0003684|GO:0005524|GO:0006281
Mtr8g0402 561 Pfam Rubredoxin metal binding domain 83 110 IPR041166 -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 85 109 - -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 172 200 - -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 268 292 - -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 307 335 - -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 342 368 - -
Mtr8g0402 561 PRINTS DNA repair protein radA signature 417 440 - -
Mtr8g0402 561 ProSiteProfiles RecA family profile 1. 159 312 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Mtr8g0402 561 PANTHER DNA REPAIR PROTEIN RADA 18 553 - -
Mtr8g0402 561 PANTHER DNA REPAIR-LIKE PROTEINRADA 18 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0402 Mtr-Chr8 4561614 4569906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0402 K04485 - gmx:100794165 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0402 8 4561614 4569906 Mtr8g0402 8 4561614 4569906 ECH
Mtr2g3536 2 49374114 49382981 Mtr8g0402 8 4561614 4569906 PCT