Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3897 ATGAATCAGGAAATGAATGGTGTGGAAGCTGAAAGGCCACTAGAGAAAATAGATTATGTGTTTAAGGTGGTTGTGATTGGTGACTCGGCAGTAGGAAAGACTCAAATGCTGTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAATCAACCATTGGAGTTGAATTTCAGACTAGAACTGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCGGTTACAAGTGCATACTACAGAGGAGCATTAGGGGCCATGCTGGTGTATGACATAACTAAAAGACAAACGTTTGATCATGTAGCTAGATGGATTGAGGAACTACGGTCACACGCCGACAACTCCATCGTGATCATGCTAATTGGTAACAAAGGTGATCTTGTGGACCAAAGAGTGGTACACACAGAACATGCTGTGGAGTTTGCAGAGGATCAGGGCCTTTTTTTCTCAGAGACTTCAGCTTTGAGTGGTGAAAATGTGAACTCTGCATTTTTCAAATTGCTTCAAGAGATTAATAAGGTTGTCTCAAAAAGGTCGTTGGAATCTAATAATGGTAAGAACAATATTGCTACACTTAAAGGATCAAAAATAGATATAATTTCAGGTCCTGAATTAGATATTACTGAAATGAAGGAAGTACCTTCATGTTCTTGTTGA 687 0.3959 MNQEMNGVEAERPLEKIDYVFKVVVIGDSAVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWIEELRSHADNSIVIMLIGNKGDLVDQRVVHTEHAVEFAEDQGLFFSETSALSGENVNSAFFKLLQEINKVVSKRSLESNNGKNNIATLKGSKIDIISGPELDITEMKEVPSCSC* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3897 228 SMART rho_sub_3 23 183 IPR001806 GO:0003924|GO:0005525
Mtr7g3897 228 CDD Rab11_like 18 181 - -
Mtr7g3897 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 198 IPR027417 -
Mtr7g3897 228 SMART ran_sub_2 26 223 - -
Mtr7g3897 228 SMART rab_sub_5 21 184 - -
Mtr7g3897 228 ProSiteProfiles small GTPase Ras family profile. 15 211 IPR001806 GO:0003924|GO:0005525
Mtr7g3897 228 ProSiteProfiles small GTPase Rho family profile. 14 185 - -
Mtr7g3897 228 ProSiteProfiles small GTPase Rab1 family profile. 16 226 - -
Mtr7g3897 228 SMART ras_sub_4 18 184 - -
Mtr7g3897 228 TIGRFAM small_GTP: small GTP-binding protein domain 20 174 IPR005225 GO:0005525
Mtr7g3897 228 PRINTS Transforming protein P21 ras signature 21 42 - -
Mtr7g3897 228 PRINTS Transforming protein P21 ras signature 44 60 - -
Mtr7g3897 228 PRINTS Transforming protein P21 ras signature 62 84 - -
Mtr7g3897 228 PRINTS Transforming protein P21 ras signature 124 137 - -
Mtr7g3897 228 PRINTS Transforming protein P21 ras signature 159 181 - -
Mtr7g3897 228 SMART arf_sub_2 6 185 - -
Mtr7g3897 228 Gene3D - 14 208 IPR027417 -
Mtr7g3897 228 PANTHER - 1 228 - -
Mtr7g3897 228 PANTHER RAS-RELATED PROTEIN RABA3 1 228 - -
Mtr7g3897 228 Pfam Ras family 22 182 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3897 Mtr-Chr7 55758641 55760088 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3897 K07904 - gmx:100787725 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3897 7 55758641 55760088 Mtr7g3897 7 55758641 55760088 ECH
Mtr7g3897 7 55758641 55760088 Mtr8g0769 8 9516857 9518876 PCT