Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3564 ATGATGAAGATCATCGCAGTGTTGCTGCTTCTGGTGTTAACCACCACTGTCACTGCTGATCCCGATAATCTTCAAGACCTCTGTGTTGCAGACCTTGCTTCTGCGATTCTAGTGAATGGATTCACATGCAAACCAGCTTCGAATGTAACCGCAGCTGATTTCTCCACCAACGTACTAGCCAAACCAGGAGCCACAAACAACACATTTGGTTCCTTAGTAACCTTAGCCAATGTTCAGAAAATCCCAGGACTCAACACACTTGGTGTGTCATTGGCACGTATTGACTATGCTGTAGGTGGACTGAACCCACCTCACACTCACCCACGTGCAACTGAGATTGTTTATGTTCTTGAAGGTCAATTAGATGTTGGGTTCATAACAACAGCTAATGTTTTGATATCAAAGACTATTGTTAAGGGTGAAACATTTGTGTTTCCTAAAGGATTGGTTCATTTCCAAAAGAACAGTGGTTATGTACCTGCTGCAGTGATTGCAGGATTCAATAGTCAATTGCAAGGAACAGTGAATATTCCTCTTACTTTGTTTGCTTCTACACCACCTGTTCCAGATAATATTTTGACTCAAGCATTCCAAATTGGTACCAAGGAAGTTCAGAAAATCAAGTCTAGGCTTGCACCCAAGTAG 645 0.4217 MMKIIAVLLLLVLTTTVTADPDNLQDLCVADLASAILVNGFTCKPASNVTAADFSTNVLAKPGATNNTFGSLVTLANVQKIPGLNTLGVSLARIDYAVGGLNPPHTHPRATEIVYVLEGQLDVGFITTANVLISKTIVKGETFVFPKGLVHFQKNSGYVPAAVIAGFNSQLQGTVNIPLTLFASTPPVPDNILTQAFQIGTKEVQKIKSRLAPK* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3564 214 Pfam Cupin 59 205 IPR006045 -
Mtr7g3564 214 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Mtr7g3564 214 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Mtr7g3564 214 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Mtr7g3564 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 212 - -
Mtr7g3564 214 SMART Cupin_1_3 56 205 IPR006045 -
Mtr7g3564 214 Gene3D Jelly Rolls 19 213 IPR014710 -
Mtr7g3564 214 CDD cupin_OxOx 20 211 - -
Mtr7g3564 214 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 6 212 - -
Mtr7g3564 214 SUPERFAMILY RmlC-like cupins 20 210 IPR011051 -
Mtr7g3564 214 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3564 Mtr-Chr7 52661672 52663206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3564 5 214 Miscellaneous Gene Families AT3G05930 52.607 7.18e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3564 - - gmx:100791628 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3564 7 52661672 52663206 Mtr7g3564 7 52661672 52663206 ECH
Mtr7g3564 7 52661672 52663206 Mtr1g3062 1 41885916 41887635 PCT