Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3062 ATGATGAAGCTTGAACATTCCTTGTTTCTTGGGACTTTGGCTCTGCTCTTAGCCACCTCTTTCTCATCAGATCCTGACTATCTTCAAGACCTCTGTGTTGCTGACCTTGCCTCAGGTGTGACAGTGAACGGATTCACTTGCAAAGAGGCATCCAAGGTAAATGCTTTTGATTTCTCCTCCATCATACTAGCCAAACCAGGAAGCACCAACAACACATTTGGCTCAGTGGTGACTGGAGCCAACGTTCAGAAAGTTCCAGGACTCAACACTCTTGGTGTGTCTCTGTCAAGGATTGATTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACCGAGGTGGTGTTTGTGCTTGAAGGCCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCAAAGACTATTAGCAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCCAATGTACCTGCTTCTGTTCTTTCTGCATTCAACAGCCAACTTCCTGGTACACAGTCCATTGCTACTACCTTGTTTGCAGCCACACCTTCTGTTCCAGACAATGTGTTGACCAAGACATTCCAGGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAAAGTAA 660 0.4652 MMKLEHSLFLGTLALLLATSFSSDPDYLQDLCVADLASGVTVNGFTCKEASKVNAFDFSSIILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTISKGEIFVFPKGLVHFQKNNANVPASVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3062 219 SMART Cupin_1_3 61 209 IPR006045 -
Mtr1g3062 219 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Mtr1g3062 219 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Mtr1g3062 219 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Mtr1g3062 219 PANTHER GERMIN-LIKE PROTEIN 14 217 - -
Mtr1g3062 219 CDD cupin_OxOx 24 215 - -
Mtr1g3062 219 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Mtr1g3062 219 Gene3D Jelly Rolls 23 217 IPR014710 -
Mtr1g3062 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 217 - -
Mtr1g3062 219 SUPERFAMILY RmlC-like cupins 24 214 IPR011051 -
Mtr1g3062 219 Pfam Cupin 63 208 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3062 Mtr-Chr1 41885916 41887635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3062 12 219 Miscellaneous Gene Families AT3G05930 56.459 1.99e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3062 - - gmx:100817475 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3062 1 41885916 41887635 Mtr1g3062 1 41885916 41887635 ECH
Mtr7g3564 7 52661672 52663206 Mtr1g3062 1 41885916 41887635 PCT