Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3539 ATGAGGAGACCTTCAACTCTTGTGGATGTGTTCCTGGTACTTGCATTGTTCTGTTGTAGCTCATGGAAAGTGTGGAGCAGCACACTATGCAAAGAGACAAACTTGGACAAAGTTAGGCCTCATAGTGTTAGTATTACTGAATTTGGTGCAGTTGGCGATGGGATCACTCTCAACACAAAAGCTTTTCAGAATGCGATTTTCTACCTAAATTCTTTCTCAGACAAAGGTGGAGCCAAGCTCTTTGTTCCAGCCGGTCGGTGGTTAACCGGTAGTTTTGATCTCATTAGTCACCTAACTTTGTGGTTGGACAAGGATGCAATAATTCTTGGATCAACGAACTCTGAGGATTGGCCAGTTGTTGATCCTCTACCGTCTTATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGTCTCATCTATGGATGTAATTTGACTGATGTTATCATAACAGGTAATGAGGGGATTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACGCGTCCGCATTTGGTAGAATTGATGAATTCAACCAGGGTTCTTATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCACGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATCGATCCAGATTCTTCTGATGATGTGTGTATTGAAGACTGTTATATAAGCACCGGCGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAATATGGAATTGCATTCGGTCGTCCCAGCACAAATATTGTCATCCACAGGCTTGTTGGAAAAACTCACACAAGCGCAGGGATAGCTATTGGAAGTGAGATGTCGGGTGGTGTATCAGATGTTCGTGCTGAAGATATTCACTTTTATGATTCATATACTGCAATCAGAATAAAGACTTCACCTGGAAGAGGTGGTTATGTTAGAAACATCTACGTCACTAACATGACCTTGGCTAATGTTGATATCGCTATTCGGTTCACTGGCTCATATGGTGATCACCCAGATGATGCTTATGACCCAAATGCTTTACCAGTAATCGAAAAGATTACAATCGAGGATGTGATAGGTGAAAATATCACAAAAGCAGGTCTTATAGAAGGTATAGAAGGTGACAATTTCGTCAACATATGCTTATCAAACATCACCCTCAATGTGAGCTCAAACTATCCATGGAACTGCTCTAACATTAGAGGATACTCTGACATGGTTTTTCCGGAAGCTTGTGAGCCGCTCAAGGAGAGGATATTCCCCGACCATTGTTCAGACTGTTACTATTTGTCAAATCACCGACAAAGTTCAAATAATCAAAACAGAGGACAAAAATTTCACTTGACATAA 1401 0.4168 MRRPSTLVDVFLVLALFCCSSWKVWSSTLCKETNLDKVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAIILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNEGIIDGQGSIWWSMFRNKTLDYTRPHLVELMNSTRVLISNLTFLNSPFWTIHPVYCSQVTVQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGKTHTSAGIAIGSEMSGGVSDVRAEDIHFYDSYTAIRIKTSPGRGGYVRNIYVTNMTLANVDIAIRFTGSYGDHPDDAYDPNALPVIEKITIEDVIGENITKAGLIEGIEGDNFVNICLSNITLNVSSNYPWNCSNIRGYSDMVFPEACEPLKERIFPDHCSDCYYLSNHRQSSNNQNRGQKFHLT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3539 466 Gene3D - 21 423 IPR012334 -
Mtr7g3539 466 SUPERFAMILY Pectin lyase-like 35 432 IPR011050 -
Mtr7g3539 466 Pfam Glycosyl hydrolases family 28 137 418 IPR000743 GO:0004650|GO:0005975
Mtr7g3539 466 PANTHER OS07G0245200 PROTEIN 7 448 - -
Mtr7g3539 466 PANTHER PECTIN LYASE-RELATED 7 448 - -
Mtr7g3539 466 SMART pbh1 328 349 IPR006626 -
Mtr7g3539 466 SMART pbh1 237 269 IPR006626 -
Mtr7g3539 466 SMART pbh1 210 236 IPR006626 -
Mtr7g3539 466 SMART pbh1 299 320 IPR006626 -
Mtr7g3539 466 SMART pbh1 271 293 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3539 Mtr-Chr7 52382711 52386204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3539 1 459 Glycoside Hydrolase AT3G62110 68.884 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3539 - - gmx:100782602 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3539 7 52382711 52386204 Mtr1g3099 1 42296505 42300535 PCT