Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3099 ATGAAGAAATTTTTATCTCTGCCAGATGTATTTTTGGTGCTTGCATTGATTTGTTGCAGCTCATGGACAGTTTGGAGCAGCTCAAGCTGCAAACAGATAAACATTAAGGAAGTTCGACCACATAGTGTTAGTATTACCGAATTTGGAGCAGTAGGAGATGGGATTACTCTCAATACAAAGGCTTTTCAGAATGCTATATTCTACCTAAATTCATATGCCGATAAAGGTGGAGCCAAACTTTTTGTCCCTGCTGGCCGGTGGTTAACTGGTAGTTTTGATCTCATTAGCCATCTCACTTTGTGGTTGGACAAAGATGCAGTAATTCTTGGATCAACGAATTCTGAAGATTGGCCGGTTGTGGATCCTCTACCATCATATGGTAGGGGAAGGGAGTTGCCGGGTGGACGGCATAGAAGCCTCATTTATGGATGTAATTTAACTGATGTTATCATAACAGGTAACAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAGCAAATTTCGTAACAAAACACTCGACCATACACGCCCCCATTTAGTCGAATTGATAAATTCAACAGAGGTTCTCATTTCAAATGCAACCTTCTTAAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCAATGTCACGGTTCAGAATGTCACAATCATTGTTCCTTTTGGTTCACCAAATACAGATGGGATTGATCCAGATTCTTCTGATAATGTATGCATTGAAGACTGTTATATAAGCACCGGCGATGATCTAATTTCCATCAAAAGTGGATGGGATGAATATGGAATTTCGTTTGGTCGACCAAGTACAAATATTAGCATCCACAGACTTACCGGGAGGACAACGAGTGCCGGAATCGCTATCGGAAGTGAGATGTCTGGAGGTGTTTCAGAAGTTTATGCAGAAGATATTTACATTTTTGATTCAAAAAGTGCAATCAGAATAAAGACTTCTCCTGGTAGGGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGACTTTGATTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAGCATCCAGATGACTCATATGACCGAGATGCTCTACCTGTGATAGAAAGGATTACTGTCGTGAATGTGATAGGGGAAAACATCAAACGCGCGGGCCTAATACAAGGTATTAAAGGTGACAACTTTGTTGATATCTGTTTATCAAACATCACTCTTAATGTGAGCAAAAACAATCCATGGAACTGCTCGGACGTTAAAGGATACTCTGAATTGGTTTCTCCGGAATCTTGTGAGCAACTCAATGAGAGAATATTTCCTGATCATGTTTCAAACTGTTACAAGTTACCATATATCATAAAGAGTTCAGATGTCATAAAGAGTTCAAGTAATCGAAACAAGGTTGCTTGGCTGCAGTCTTGGTAG 1416 0.3948 MKKFLSLPDVFLVLALICCSSWTVWSSSSCKQINIKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSYADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGCNLTDVIITGNNGTIDGQGSIWWSKFRNKTLDHTRPHLVELINSTEVLISNATFLNSPFWTIHPVYCSNVTVQNVTIIVPFGSPNTDGIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNISIHRLTGRTTSAGIAIGSEMSGGVSEVYAEDIYIFDSKSAIRIKTSPGRGGYVRNVYISNMTLINVDIAIRFTGLYGEHPDDSYDRDALPVIERITVVNVIGENIKRAGLIQGIKGDNFVDICLSNITLNVSKNNPWNCSDVKGYSELVSPESCEQLNERIFPDHVSNCYKLPYIIKSSDVIKSSSNRNKVAWLQSW* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3099 471 Gene3D - 23 424 IPR012334 -
Mtr1g3099 471 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Mtr1g3099 471 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Mtr1g3099 471 PANTHER OS07G0245200 PROTEIN 10 453 - -
Mtr1g3099 471 PANTHER PECTIN LYASE-RELATED 10 453 - -
Mtr1g3099 471 SMART pbh1 327 348 IPR006626 -
Mtr1g3099 471 SMART pbh1 271 292 IPR006626 -
Mtr1g3099 471 SMART pbh1 298 319 IPR006626 -
Mtr1g3099 471 SMART pbh1 237 269 IPR006626 -
Mtr1g3099 471 SMART pbh1 141 168 IPR006626 -
Mtr1g3099 471 SMART pbh1 210 236 IPR006626 -
Mtr1g3099 471 SUPERFAMILY Pectin lyase-like 36 430 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3099 Mtr-Chr1 42296505 42300535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3099 1 471 Glycoside Hydrolase AT3G62110 66.946 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3099 - - mtr:MTR_1g086030 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3099 1 42296505 42300535 Mtr1g3099 1 42296505 42300535 ECH
Mtr7g3539 7 52382711 52386204 Mtr1g3099 1 42296505 42300535 PCT