Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3160 ATGCGCGTTCCTTTGTTGGTGGCTTTGGCCGCAATGGCGGTCACAGTTACGGTGGTATACGGCGGTTTTCCGGGGAGTTATCTTTCCCTTGAACGAACCATCCCTCTTAACCACCAAGTTGAACTCACCACTCTCAAAGCTCGCGACAGAGCTCGTCACGGCGGTCGAATCTTGCAAGACGGCGGTGGTGGTATTCTTGACTTCTCAGTCCAAGGAACCTCCGATCCTTACTTAGTTGGGTTGTATTTTACTAAAGTGAAGATGGGTTCTCCTGCTAAAGAATTTTACGTTCAGATTGATACTGGAAGTGATATATTATGGCTTAATTGCAATACTTGCAATAATTGCCCCAAATCTAGTGGTTTAGGGATTGATCTCAATTACTTTGACACCGCGAGTTCATCCACTGCTGCGCTGGTTTCCTGCTCTGATCCGGTGTGTTCTTATGCGGTTCAAACGGCTACAAGTCAGTGCTCTTCTCAGGCTAATCAGTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACGTCCGGTTATTATGTTTATGATGCTATGTATTTTGATGTGATCATGGGACAGTCTGTGTTTTCTAACTCTTCATCTACCGTTGTTTTTGGGTGTAGCACCTATCAGTCTGGGGATTTGGCTCGGACAGAAAAGGCAGTTGATGGAATTTTTGGGTTTGGTCCCGGTGCTTTGTCTGTTGTATCACAAGTGTCATCACAAGGCATGGCACCCAAAGTGTTCTCTCATTGCTTAAAGGGACAGGGCAGTGGAGGAGGCATACTGGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATACTCCACTTGTCCCATTACAGCCTCATTATAATTTAAATCTTCAAAGCATTGCAGTCAATGGACAAATTCTCCCAATCGATCAAGATGTATTTGCAACAGGTAACAATCGAGGAACTATAGTTGATTCCGGTACTACATTGGCATACCTTGTTCAAGAAGCTTATGATCCTTTTCTCAATGCTATAACTACCACTGTGTCACAATTTTCCAAACCCATTATTTCCAAAGGAAACCAGTGTTATCTGGTCCCAACCAGCCTAGGTGATATATTCCCTCTAGTCAGTTTAAATTTCATGGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTATCTTATACATTATGGTTTCCTGGATGGTGCTGCAATGTGGTGCATTGGTTTCCAAAAAGTGCAGAAGGGATACACAATTTTAGGAGATCTTGTTCTCAAAGATAAGATTTTTGTATACGATTTAGCTAATCAACGAATTGGATGGACCGACTATGATTGTTCCTTGGCTGTAAATGTCTCTGTGGCTACGAGCAAGAGTAAGGATGCATACCTCAGTGCAGGACAGATGAGTGTTAGCTCCTCACACGTCAGCATTCTCTCCAAGTTGCAACTTGTAAGGATTGTGGCTTTTCTTGTGCATATAATAGTTTTCATGGAGCCCCAGTTTTTGTAG 1494 0.4317 MRVPLLVALAAMAVTVTVVYGGFPGSYLSLERTIPLNHQVELTTLKARDRARHGGRILQDGGGGILDFSVQGTSDPYLVGLYFTKVKMGSPAKEFYVQIDTGSDILWLNCNTCNNCPKSSGLGIDLNYFDTASSSTAALVSCSDPVCSYAVQTATSQCSSQANQCSYTFQYGDGSGTSGYYVYDAMYFDVIMGQSVFSNSSSTVVFGCSTYQSGDLARTEKAVDGIFGFGPGALSVVSQVSSQGMAPKVFSHCLKGQGSGGGILVLGEILEPNIVYTPLVPLQPHYNLNLQSIAVNGQILPIDQDVFATGNNRGTIVDSGTTLAYLVQEAYDPFLNAITTTVSQFSKPIISKGNQCYLVPTSLGDIFPLVSLNFMGGASMVLKPEQYLIHYGFLDGAAMWCIGFQKVQKGYTILGDLVLKDKIFVYDLANQRIGWTDYDCSLAVNVSVATSKSKDAYLSAGQMSVSSSHVSILSKLQLVRIVAFLVHIIVFMEPQFL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3160 497 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Mtr7g3160 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Mtr7g3160 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Mtr7g3160 497 Gene3D Acid Proteases 269 446 IPR021109 -
Mtr7g3160 497 PANTHER ASPARTYL PROTEASES 3 459 IPR001461 GO:0004190|GO:0006508
Mtr7g3160 497 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Mtr7g3160 497 SUPERFAMILY Acid proteases 77 442 IPR021109 -
Mtr7g3160 497 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
Mtr7g3160 497 Gene3D Acid Proteases 67 268 IPR021109 -
Mtr7g3160 497 CDD pepsin_A_like_plant 82 440 IPR034161 -
Mtr7g3160 497 ProSiteProfiles Peptidase family A1 domain profile. 82 436 IPR033121 -
Mtr7g3160 497 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3160 Mtr-Chr7 48588113 48593382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3160 77 441 Miscellaneous Gene Families AT1G44130 28.093 3.16e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3160 - - gmx:100804147 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3160 7 48588113 48593382 Mtr7g3160 7 48588113 48593382 ECH
Mtr7g3160 7 48588113 48593382 Mtr1g2104 1 31000623 31005216 PCT