Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2104 ATGCACCGACTCTATCATCACCATTCCCATTTCCCATTATTAGACAAACCCATAAACAGAAAAAACCAAACAAAAATGCGTTTTCACACTCCAACGTTCTTCTTCTTTGGATGCTGCATATTCACCTTCGTCGCCACGGCGGTTCACGGCGCCGGTTACCTTCCTCTACAACGAAACGTTCCTCTTAACCACCGCGTTGAGATAGACACGCTTAGAGCTCGTGACAGAGTTCGCCATGGGAGAATTTTGCGTGCTAGTGTTGGTGGTGTTGTCGACTTCAGAGTTCAAGGCTCTTCCGATCCATCCACTCTTGGGCTGTATACTACCAAAGTAAAGATGGGAACTCCACCTAGGGAATTTACTGTTCAGATTGATACTGGAAGTGACATTTTGTGGATTAATTGCAATACTTGCAGTAATTGCCCTAAATCTAGTGGACTTGGGATTGAGCTCAATTTCTTTGACACGGTTGGTTCATCCACAGCTGCGTTGGTTCCTTGCTCGGACCCCATGTGCGCTTCTGCGATTCAAGGTGCGGCAGCTCAATGCTCCCCTCAGGTTAATCAGTGCAGCTACACCTTTCAGTATGAAGATGGGAGTGGTACTTCCGGTGTTTATGTCTCTGATGCCATGTATTTTGACATGATTCTCGGACAATCTACTCCTGCCAATGTTGCTTCTTCAGCTACCATTGTTTTCGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGACGGATAAAGCGGTCGATGGAATTCTTGGGTTTGGCCCTGGTGAACTATCTGTTGTATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTGAAAGGAGATGGCAATGGAGGAGGCATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGGCAAGTTCTCTCAATTAATCCAGCTGTATTTGCAACATCTGACAAACGAGGAACTATCATTGACAGTGGTACAACATTGTCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCAACGCAGTAGATACGGCCGTGTCACAATTTGCTACTTCCTTTATTTCAAAAGGAAGCCAGTGTTATCTGGTCTTAACCAGTATAGATGATAGTTTTCCTACAGTCAGTTTCAACTTTGAGGGTGGAGCATCAATGGATTTAAAACCATCACAATACCTTTTGAATAGGGGTTTCCAGGACGGTGCTAAAATGTGGTGCATAGGTTTCCAGAAAGTGCAAGAGGGAGTCACAATTTTAGGAGATCTTGTCCTGAAAGATAAGATAGTTGTCTATGACTTGGCTCGTCAGCAAATAGGATGGACTAACTATGATTGTTCTATGTCTGTAAACGTCTCAGTGACTACAAGCAAGGATGAGTACATCAATGCAAGAGCAAGACAGACGGGCAGCTGCTCGAGGATAGGGATTCCCTCCAAGTTACTACCTGTAAGCATTGTGGCTCTTTCTATGCACATAATAATCTTCATGAAGTCGTTACATTTGTAA 1572 0.4351 MHRLYHHHSHFPLLDKPINRKNQTKMRFHTPTFFFFGCCIFTFVATAVHGAGYLPLQRNVPLNHRVEIDTLRARDRVRHGRILRASVGGVVDFRVQGSSDPSTLGLYTTKVKMGTPPREFTVQIDTGSDILWINCNTCSNCPKSSGLGIELNFFDTVGSSTAALVPCSDPMCASAIQGAAAQCSPQVNQCSYTFQYEDGSGTSGVYVSDAMYFDMILGQSTPANVASSATIVFGCSTYQSGDLTKTDKAVDGILGFGPGELSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQVLSINPAVFATSDKRGTIIDSGTTLSYLVQEAYDPLVNAVDTAVSQFATSFISKGSQCYLVLTSIDDSFPTVSFNFEGGASMDLKPSQYLLNRGFQDGAKMWCIGFQKVQEGVTILGDLVLKDKIVVYDLARQQIGWTNYDCSMSVNVSVTTSKDEYINARARQTGSCSRIGIPSKLLPVSIVALSMHIIIFMKSLHL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2104 523 Gene3D Acid Proteases 296 474 IPR021109 -
Mtr1g2104 523 PRINTS Pepsin (A1) aspartic protease family signature 113 133 IPR001461 GO:0004190|GO:0006508
Mtr1g2104 523 PRINTS Pepsin (A1) aspartic protease family signature 342 353 IPR001461 GO:0004190|GO:0006508
Mtr1g2104 523 PRINTS Pepsin (A1) aspartic protease family signature 439 454 IPR001461 GO:0004190|GO:0006508
Mtr1g2104 523 SUPERFAMILY Acid proteases 105 471 IPR021109 -
Mtr1g2104 523 Pfam Xylanase inhibitor N-terminal 107 294 IPR032861 -
Mtr1g2104 523 Gene3D Acid Proteases 91 295 IPR021109 -
Mtr1g2104 523 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 44 485 - -
Mtr1g2104 523 PANTHER ASPARTYL PROTEASES 44 485 IPR001461 GO:0004190|GO:0006508
Mtr1g2104 523 CDD pepsin_A_like_plant 107 467 IPR034161 -
Mtr1g2104 523 ProSiteProfiles Peptidase family A1 domain profile. 107 463 IPR033121 -
Mtr1g2104 523 Pfam Xylanase inhibitor C-terminal 312 463 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2104 Mtr-Chr1 31000623 31005216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2104 82 468 Miscellaneous Gene Families AT1G44130 27.384 8.03e-42 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2104 - - gmx:100820394 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2104 1 31000623 31005216 Mtr1g2104 1 31000623 31005216 ECH
Mtr7g3160 7 48588113 48593382 Mtr1g2104 1 31000623 31005216 PCT