Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3003 ATGGTGGGTGTAATATCCTTGATAACAGGGATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCAGAGCAGGTTACTCAAGGAATTGATGCTAGCAACCTTACCGCAATTATCACAGGAGGAGCAAGTGGTATAGGGTTGGAGACAACAAGAGTGTTGGCTCTTAGGAAGGTCCATGTTATCATTGCTGCAAGAAACATTGAATCTGCAGAGGAAGCCAAACAACAAATAACACAAGAGAACAAATCTGCACGAGTGGACATAATGAAACTTGACCTATGCTCAACAAAGTCTGTCCGATCATTCGTCGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAATAATGTTCTGCCCCTTCAAAATCTCAGAGGAGGGAATTGAGATGCAATTTGCAACAAACCATCTTGGCCATTTCCTCTTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAACAACTGGAATAGAGGGGAGGATCATAAATCTATCATCAATTGCTCATAGATACACTTACTTTAGAAAGGGGATTAAATTTGAGAAGATCAATGATAAAAAAGGTTATTCTAGCAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACATGCAAATGAACTCTCTCGTCGCCTGCAGGAAGAGGGAGTGAACATCACAGTCAACTCTGTCCACCCAGGAGTGATAATGACTCCTCTTATGAGATACTCTTCTTACACAATGCACTTGTTGAAGATCTTCAGCTTTTACATATGGAAGAACGTCCCACAGGGAGCTGCCACGACATGTTATGTTGCACTCCACCCAAGTGTAAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATGAATTCAAGCCAAGTGCATATGCAAAAAATAAACTCTTAGCAAAGAAACTTTGGGATTTCAGCAACAAGTTGATCAATTCAATTTCAAAAGCTTGA 975 0.4062 MVGVISLITGMAGPSGFGSASTAEQVTQGIDASNLTAIITGGASGIGLETTRVLALRKVHVIIAARNIESAEEAKQQITQENKSARVDIMKLDLCSTKSVRSFVDNFIALDLPLNILINNAGIMFCPFKISEEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHRYTYFRKGIKFEKINDKKGYSSKKAYGQSKLANILHANELSRRLQEEGVNITVNSVHPGVIMTPLMRYSSYTMHLLKIFSFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNEFKPSAYAKNKLLAKKLWDFSNKLINSISKA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3003 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Mtr7g3003 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Mtr7g3003 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Mtr7g3003 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Mtr7g3003 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Mtr7g3003 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Mtr7g3003 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Mtr7g3003 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Mtr7g3003 324 PANTHER RETINOL DEHYDROGENASE 5 321 - -
Mtr7g3003 324 Gene3D - 24 321 - -
Mtr7g3003 324 Pfam short chain dehydrogenase 36 182 IPR002347 -
Mtr7g3003 324 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 321 - -
Mtr7g3003 324 Coils Coil 61 88 - -
Mtr7g3003 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 297 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3003 Mtr-Chr7 46940036 46945242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3003 38 297 Acyl Lipid Metabolism Gene Families AT3G55290 26.812 1.10e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3003 K11153 - gmx:100801849 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3003 7 46940036 46945242 Mtr7g3003 7 46940036 46945242 ECH
Mtr7g3003 7 46940036 46945242 Mtr1g2300 1 33459050 33462487 PCT