Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2300 ATGGTGGGTATTTTCTCGTTGGTTACGGGCATGGCTGGACCAAGTGGATTTGGATCCTCTACAACAGCTGAACAAGTTACTCAAGGAATTGATGCAAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTCTTGGCTCTCCGAAAGGTGCATGTCATCATCGCCGCAAGAAACATGGAGTCTGCAAAGGAAGCTAAACAAATTATACTACAAGACAACGAGTCTGCTCGAGTTGACATAATGAAGCTCGACCTTTGTTCAGTGAAGTCTGTTAGATCGTTTGTTGAAAACTTCCTCGCTCTCGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCCTTCCAACTGACACAAGATGGAATTGAGATGCAGTTTGCAACAAATCATCTTGGTCATTTCCTTTTGACAAACCTTCTACTTGAGAAAATGAAACAAACCGCAAAAGCCACTGGAATTGAGGGCAGAATCATAAATCTTTCATCAATTGCTCATACCTACACTTATGAAGAAGGCATTCGATTGGATAATATCAATGATCAAATTGGTTACTCTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCTAACATACTACACGCAAATGAGCTTTCTCGTCGCTTGAAGGAAGAAGGTGTCAATATCACAGCCAACTCAGTACACCCAGGAGTAATAATGACTCCTCTTATGAGACACTCTTCTTTACTTATGAACTTCTTGAAGATGTTCACATTTTACATATGGAAGAATGTCCCACAGGGAGCTGCAACAACATGCTATGTTGCTCTTCATCCAAGCTTGAAAGGAGTAACTGGGAAGTACTTTTTGGATTGTAATGAGTTTCAACCAAGTGCTTTTGCGTCAAATGGACTATTAGGAAGAAAACTTTGGGATTTTAGCAACAAGTTGATCAATTCAATTTCAAAGTCTTGA 972 0.4084 MVGIFSLVTGMAGPSGFGSSTTAEQVTQGIDASNLTAIITGGASGIGLETARVLALRKVHVIIAARNMESAKEAKQIILQDNESARVDIMKLDLCSVKSVRSFVENFLALDLPLNILINNAGVMFCPFQLTQDGIEMQFATNHLGHFLLTNLLLEKMKQTAKATGIEGRIINLSSIAHTYTYEEGIRLDNINDQIGYSDKKAYGQSKLANILHANELSRRLKEEGVNITANSVHPGVIMTPLMRHSSLLMNFLKMFTFYIWKNVPQGAATTCYVALHPSLKGVTGKYFLDCNEFQPSAFASNGLLGRKLWDFSNKLINSISKS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2300 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Mtr1g2300 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Mtr1g2300 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Mtr1g2300 323 Gene3D - 22 320 - -
Mtr1g2300 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Mtr1g2300 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Mtr1g2300 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Mtr1g2300 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Mtr1g2300 323 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32, CHLOROPLASTIC-LIKE 5 320 - -
Mtr1g2300 323 PANTHER RETINOL DEHYDROGENASE 5 320 - -
Mtr1g2300 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Mtr1g2300 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Mtr1g2300 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2300 Mtr-Chr1 33459050 33462487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2300 35 242 Miscellaneous Gene Families AT2G29340 28.169 3.03e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2300 K11153 - gmx:100807056 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2300 1 33459050 33462487 Mtr1g2300 1 33459050 33462487 ECH
Mtr7g3003 7 46940036 46945242 Mtr1g2300 1 33459050 33462487 PCT