Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2800 ATGACAAAGACCGATCGAAATGCAGTTCGAGTTGTCGTCGCCGGTGACCGCGGCACCGGAAAATCAAGCCTCATCGCTGCCATAGCGTCGGAGTCATTCCCCGATACCGTTCTTCCCGTTCTTCCGCCTACTCTCTTGCCCGCAGATTATTTCCCCGATCATGTTCCCATTACCGTAATCGACACATCCTCTAGTTTGGAGAAACAAAACAAGCGCAATGAAGAATTGAAAGGTGCTGATGTCGTGGTTTTAACATATGCTTGCAATGATTCTCAGTCCTTTTCGCGATTGAGTTCTTACTGGTTTCGCGAACTACAAAAGTTGGAGGTAACGGTACCTATAATTGTGGTTGGTTGCAAGCTAGATCTGCGAGATGAAAGCCAACAAGTGAGCTTAGAACGTCTCATGGCACAGCTCCTACAAGAGTTCAAGAATGTTGCCACCTGCATTGAATGCTCTGCAGCGACACTATACCAGGTCCCAGAAGTTTTTTATTTTGCTCAAAAAGCTGTACTACATCCGGTAGAGCCATTGTTTGATCATGAAAGTCAAGCTTTAACAGATAAATGTGTTAGGGCGTTGAGAAGAATATTTGTTCTTTGTGACCGTGACATGGATGATGCCCTCAATGATGCAGAACTAAGTGATTTTCAGGTTAGATGTTTCAATGCACCATTGGAGTTACCTCAAATAGCAGATGTCAAAACAGTTGTACAACAGGATGTACCAGAAGGAATCAACTCACATGGTCTTACTTTCCCAGGATTTTTGTATATACATAATATGTTCTTAAGAAAAGGGAATCCGGAGACATTTTGGGCTGTGTTAAGATACTTTGGATATGATAATGATCTAAAACTCAAGGACAATTTCCTTCCTGTTCCATCTAAGACTGCTCCTGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGCATCTTTAGACTATTGGATACCGATAAAGACCGAGCCCTAAAACCTTCCGAAGTGGACAAGCTGTTTTGTACTGCTCCAGAAAGTCCATGGAATGATGCTCCATATAACAATGTTACTGAGAGAACTGATATGGATTACATGTCTCTTAACGGATTCCTATCCCAGTGGGCCCTTATGACATTACTTGATCCACCATGTACCCTGGCGAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGGAGATCAGTTGATCGCAAGAAACAAACGACAGAAAGGAATGTGTTCCAATGCTACGTTTTTGGTTCTAAAAATGCCGGCAAATCTGCTCTGTTGGATGCATTATTGGGAAGGCCTTTCTCAAATAATTATACTCCAACAACAGTTGAGAAGTTTGCTGCAAATGCCATTGAATTAATAGGGGTGAGTATCAAGGGAACTAGGAAAACTCTTGTATTACGGGAGATACCTGAGAGTGAAGTATCGAAATTTCTGTCAAATCAGGATTATTTGGCAGCGTGTGATGTAGCTATTTTTGTGTATGACAGCTCAGATGAATATTCGTGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTGGGCAAGGTGATCTAACTGGTTATAGAGTTCCTTGCCTCCTTATTGCTGCTAAGGATGATCTAACTCCATATCCAAGGGCGGTGCAAGATTCAGTGAAGGTTACTCTGGAGTTGGGAATAGAGGCACCTATTCACGTAAGCATGAAATTAGGTGATTCAAATAATGTGTATAATAAAATTGTTAGTGCTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGATTGGGAAGAAAAGAAAGCAATACAATCGGCTTGTTCAGAACTCTCTTATTTTTGCTTCAGTTGGGACCGCTATGGCAGTTGTTGGTTTGGCAGCATGCCGTGCATATGCAGTGAAGAAGAATTCTTCTGCTTAG 1932 0.4224 MTKTDRNAVRVVVAGDRGTGKSSLIAAIASESFPDTVLPVLPPTLLPADYFPDHVPITVIDTSSSLEKQNKRNEELKGADVVVLTYACNDSQSFSRLSSYWFRELQKLEVTVPIIVVGCKLDLRDESQQVSLERLMAQLLQEFKNVATCIECSAATLYQVPEVFYFAQKAVLHPVEPLFDHESQALTDKCVRALRRIFVLCDRDMDDALNDAELSDFQVRCFNAPLELPQIADVKTVVQQDVPEGINSHGLTFPGFLYIHNMFLRKGNPETFWAVLRYFGYDNDLKLKDNFLPVPSKTAPDQSVELTGEAVEFLNGIFRLLDTDKDRALKPSEVDKLFCTAPESPWNDAPYNNVTERTDMDYMSLNGFLSQWALMTLLDPPCTLANLIYIGYSGNPAAALRVTRRRSVDRKKQTTERNVFQCYVFGSKNAGKSALLDALLGRPFSNNYTPTTVEKFAANAIELIGVSIKGTRKTLVLREIPESEVSKFLSNQDYLAACDVAIFVYDSSDEYSWKKSRDLLEKVAGQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTLELGIEAPIHVSMKLGDSNNVYNKIVSAAEHPHLSIPETEIGKKRKQYNRLVQNSLIFASVGTAMAVVGLAACRAYAVKKNSSA* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2800 643 Pfam EF hand associated 346 413 IPR013566 -
Mtr7g2800 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 206 IPR027417 -
Mtr7g2800 643 PIRSF Miro 5 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Mtr7g2800 643 Gene3D - 287 481 - -
Mtr7g2800 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 595 IPR027417 -
Mtr7g2800 643 ProSiteProfiles Miro domain profile. 417 590 IPR020860 GO:0003924|GO:0005525
Mtr7g2800 643 SMART ras_sub_4 6 174 - -
Mtr7g2800 643 Pfam Ras family 424 549 IPR001806 GO:0003924|GO:0005525
Mtr7g2800 643 Pfam Ras family 10 171 IPR001806 GO:0003924|GO:0005525
Mtr7g2800 643 PRINTS Transforming protein P21 ras signature 9 30 - -
Mtr7g2800 643 PRINTS Transforming protein P21 ras signature 110 123 - -
Mtr7g2800 643 PRINTS Transforming protein P21 ras signature 149 171 - -
Mtr7g2800 643 Gene3D - 181 285 - -
Mtr7g2800 643 PANTHER MITOCHONDRIAL RHO GTPASE 2 4 491 - -
Mtr7g2800 643 PANTHER RHO FAMILY GTPASE 4 491 IPR003578 GO:0005525|GO:0007264
Mtr7g2800 643 CDD Miro2 416 602 - -
Mtr7g2800 643 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Mtr7g2800 643 ProSiteProfiles small GTPase Rab1 family profile. 3 201 - -
Mtr7g2800 643 Gene3D - 488 588 IPR027417 -
Mtr7g2800 643 Pfam EF hand associated 225 308 IPR013567 -
Mtr7g2800 643 Gene3D - 5 176 IPR027417 -
Mtr7g2800 643 ProSiteProfiles Miro domain profile. 6 173 IPR020860 GO:0003924|GO:0005525
Mtr7g2800 643 SMART rab_sub_5 9 174 - -
Mtr7g2800 643 SMART rho_sub_3 11 174 IPR001806 GO:0003924|GO:0005525
Mtr7g2800 643 SUPERFAMILY EF-hand 177 373 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2800 Mtr-Chr7 44697411 44706847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2800 6 641 EF-hand Containing Proteins AT3G63150 58.333 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2800 K07870 - gmx:100803790 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2800 7 44697411 44706847 Mtr1g2510 1 35987162 35995631 PCT