Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2653 ATGGCCCTCCTAAGACATTTCCTCCTCTCATTCACTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATGATTCACCTTCCTACGATGATAGTGATACATTATTATTCAAGAACATGATAGAGCAAAACACAAATGATGTTTTGTGCTTAGACCAATTTGGTGTCTCTTCACGTTCACTTAAAATTGTTAATGTTAGAGATTATGGAGCTAAAGGGGATGGTCATACGGATGACACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTTCGTCAGGGCAATCAGTTTTAGTGGCACCTCAAGATTATAATTATCTACTCAAACCAATCAGATTCTCTGGTCCTTGCAAATCTAACATATCAGTTCAGATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGTGGAAGTTCAACAACTATTAGTTAATGGTGGTGGAACCATCGATGGAAAAGGAAACATATGGTGGGAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTGATAGTTGCAAGGACTTAATAGTTGAGGATTTGACAATACAAAATGCGCAACAAATTCACGTTTCATTCCAGGATTCGACTAATGTTAAAGCTTCTGGTCTCAAAGTGTCATCACCAGGGAATAGTCCTAACACCGACGGAATTCATATCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTAGATGGATCTAGTAACGTAGAAGCCACAGACATTACTTGCGGACCAGGCCATGGCATCAGTATTGGAAGTTTGGGGGCTGGAAAATCCAAGGACTTTGTTTCTGGAGTGTTAGTGAATGGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACATGGCCGGGAGGTTCAGGAAGTGCTAGCAACATCAAATTTCAGAACATTGAAATGGACAATGTGACCAACCCCATTATAATTAACCAGAATTACTGTGACAAGAAAAAAAAACCATGTAAAAAAATGGACTCTGCAGTCCAAATTAGTAATGTGTTGTACCAGAATATAACAGGCAAAAGTGCTTCTGATGTAGCTGTAAAGTTTGATTGCAGTGAGAAATTTCCATGCAAGGAGATAAAAATGCAAAACATACTCTTAATATGTGAAGAAGGAGAACCTGCTAAGGCTTTATGCAACAATGTTCAATTGTCTTACATAGGAAATGTTAACCCACGCTGCAACTCACAGAAATATACAAATTAA 1353 0.3821 MALLRHFLLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDSDTLLFKNMIEQNTNDVLCLDQFGVSSRSLKIVNVRDYGAKGDGHTDDTQAFKKAWEVVCSSGQSVLVAPQDYNYLLKPIRFSGPCKSNISVQISGSLEASDNPSDYSEDQRHWLVFVEVQQLLVNGGGTIDGKGNIWWENSCKRNKKKPCKDAPTALTFDSCKDLIVEDLTIQNAQQIHVSFQDSTNVKASGLKVSSPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSLGAGKSKDFVSGVLVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMDNVTNPIIINQNYCDKKKKPCKKMDSAVQISNVLYQNITGKSASDVAVKFDCSEKFPCKEIKMQNILLICEEGEPAKALCNNVQLSYIGNVNPRCNSQKYTN* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2653 450 Pfam Glycosyl hydrolases family 28 108 432 IPR000743 GO:0004650|GO:0005975
Mtr7g2653 450 SUPERFAMILY Pectin lyase-like 72 445 IPR011050 -
Mtr7g2653 450 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Mtr7g2653 450 PANTHER ENDO POLYGALACTURONASE 7 446 - -
Mtr7g2653 450 SMART pbh1 338 359 IPR006626 -
Mtr7g2653 450 SMART pbh1 256 277 IPR006626 -
Mtr7g2653 450 SMART pbh1 206 255 IPR006626 -
Mtr7g2653 450 SMART pbh1 309 330 IPR006626 -
Mtr7g2653 450 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Mtr7g2653 450 Gene3D - 67 449 IPR012334 -
Mtr7g2653 450 PANTHER - 7 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2653 Mtr-Chr7 43220036 43227308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2653 55 443 Glycoside Hydrolase AT3G07970 55.725 3.90e-146 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2653 K01184 - gmx:100797601 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2653 7 43220036 43227308 Mtr7g2653 7 43220036 43227308 ECH
Mtr1g1709 1 23324559 23328209 Mtr7g2653 7 43220036 43227308 PCT