Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1709 ATGACAATGGCCCTCCAAAGATATCTCTCATTCATTATGATCATGATTTATTTTGTTGCTTGTTATAGTACTAATTTGCAAGAGGACCCACTTAGTTCAATTGTTGTGAATTCGCCTTATATAAATGATGGTGGAATATTCAAGGATTTTCTCATGCAAAGTACAGATCATGTTTTGAGCTTAAAGAGCAAGTTGGGTGACACTTCTCCTTCATCGATGAAAACCTTTAATGTTGATCAGTATGGAGCTCAAGGAGATGGTAAAACTGATGACACAAAGGCATTCAAGAAGGTTTGGCAAGTAGCATGTTCTTCTAAGGGATCAGTTGTTGTGTTGGCTCAAAAGAATTATCTAGTTAAGCCAATCACATTTTCCGGCCCTTGCAAATCCAAGAGTATCGTAGTTCAGATCTCTGGAAGCCTTGTAGCATCAGATAACCCATCTGATTATAAACAAGACCCCACACATTGGCTTATGTTTGATAGTGTTCAGAAACTATCTGTTAAAGGTGGTGGAACCATTCATGGAAATGGAAATATTTGGTGGCAGAACTCATGCAAAACCAACAAAAAACTCCCTTGCAAGGAAGCCCCTACGGCGTTAACTTTGTACAAGTGCAATAACTTGGTAGTTGAGGATTTGAATGTAAAAAATGGGCAACAAATTCATGTTCAATTCCAAAATTCTGCCAATGTTAGAGTTTCGGGTCTCACTGTTACAGCACCAGAGGACAGTCCAAACACTGATGGAATTCATGTCACCAACACTCAAAACATCCAAATCTCAAACTCTATTATAGGAACTGGGGATGATTGTATATCAATTGTAAATGGCACCAAGAATCTTAAAGCTACAGACATAACCTGCGGACCAGGCCATGGTATCAGCATTGGAAGCTTAGGGGAAGGGGGCTCCAAGGAATTTGTTTCAGGAATAACTGTGAATGGAGCTAAATTATCTAGAACTACTAATGGAGTAAGAATTAAGACATGGCAGGGTGGGTCAGGAAGTGCAAGCAACATTAAATTTCAGAACATTCAAATGGAAAATGTAACTAACCCCATAATAATAGATCAGAACTACTGTGATCAACAGAGTCCATGCCAAAAACAGAAATCTGCGGTTCAGATAAGGAATGTATTGTACCAGAACATAAAAGGTACAAGTGCTTCTGATGTAGCTATGCAATTTAATTGTAGCCAGAACTTTCCATGTCAAGGGATACTATTGCAGAACATAGGCCTTGAACTTGAAGGTGGAGGAGAGGCTAAGGCTTCATGCAACAATGTGAAATTGTCATACAGAGGAAATGTTAGTCCAAGCTGCAATTACATCGAGGAAATGCATGAACTTGGTGGCTTTGGAAAGACTCATAGTATGAATTAA 1386 0.3896 MTMALQRYLSFIMIMIYFVACYSTNLQEDPLSSIVVNSPYINDGGIFKDFLMQSTDHVLSLKSKLGDTSPSSMKTFNVDQYGAQGDGKTDDTKAFKKVWQVACSSKGSVVVLAQKNYLVKPITFSGPCKSKSIVVQISGSLVASDNPSDYKQDPTHWLMFDSVQKLSVKGGGTIHGNGNIWWQNSCKTNKKLPCKEAPTALTLYKCNNLVVEDLNVKNGQQIHVQFQNSANVRVSGLTVTAPEDSPNTDGIHVTNTQNIQISNSIIGTGDDCISIVNGTKNLKATDITCGPGHGISIGSLGEGGSKEFVSGITVNGAKLSRTTNGVRIKTWQGGSGSASNIKFQNIQMENVTNPIIIDQNYCDQQSPCQKQKSAVQIRNVLYQNIKGTSASDVAMQFNCSQNFPCQGILLQNIGLELEGGGEAKASCNNVKLSYRGNVSPSCNYIEEMHELGGFGKTHSMN* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1709 461 SMART pbh1 206 226 IPR006626 -
Mtr1g1709 461 SMART pbh1 338 359 IPR006626 -
Mtr1g1709 461 SMART pbh1 229 255 IPR006626 -
Mtr1g1709 461 SMART pbh1 256 277 IPR006626 -
Mtr1g1709 461 SMART pbh1 309 330 IPR006626 -
Mtr1g1709 461 PANTHER - 7 448 - -
Mtr1g1709 461 Pfam Glycosyl hydrolases family 28 103 431 IPR000743 GO:0004650|GO:0005975
Mtr1g1709 461 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Mtr1g1709 461 Gene3D - 62 450 IPR012334 -
Mtr1g1709 461 PANTHER ENDO POLYGALACTURONASE 7 448 - -
Mtr1g1709 461 SUPERFAMILY Pectin lyase-like 72 444 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1709 Mtr-Chr1 23324559 23328209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1709 61 442 Glycoside Hydrolase AT3G07970 57.403 7.56e-157 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1709 K01184 - gmx:100816917 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1709 1 23324559 23328209 Mtr1g1709 1 23324559 23328209 ECH
Mtr1g1709 1 23324559 23328209 Mtr7g2653 7 43220036 43227308 PCT