Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1471 ATGGGAAATTCTTTTGGTTGTTCAGCTTCTGGTGAGAGGTTGGTATCTGCAGCAAGAGATGGTGATTTGGTTGAAGCAAAGATGCTTTTGGAATTCAATCCTTGTCTTGCAAAATACTCAACTTTTGGTGGTCTTAATTCACCTCTTCATTTTGCAGCTTCTAAGGGTCATAACGAGATTGTGGCATTGTTGCTTGAAAAAGGAGCTGATGTGAATTCAAGGAACTATTGTGGGCAGACAGCTTTGATGCAAGCTTGTAGACATGGTTATTGGGAAGTTGTACAAACCCTTATGCTGTACAGATGTAATGTTATGAAAGCAGATTATCTAAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTCAGTGGGCATGTAAGATGCATTAGACTTGTGGTGGCTGACTTGGTCCCAAGTGCTCCTTATGAAACTCTACATGCTCGTGTGGATGCTGATGTTGGTGATGGATCAAATACAAAAAGAAAAAACGAACAAAGTGAATTGTCCAAGTTTGTAAACAAGACAGCAGATGCAGGTATTACTGCACTTCATATGGCTGCGTTGAACGGGTACTTCGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGCATCAGCTGCAACATATCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCATTGCATTATGCTGCGTGTGGCGGAAATTTAAAATGCTGTCAGATCCTCCTTTCAAAAGGTGCAACTCGGATGGCTTTGAACTGCAATGGGTGGCTTCCACTTGATGTGGCTAGGATGTGGGGGCGTCACTGGCTTGAACCATTGCTGGCACCGAGTTCTGATACCATCGTATCATCATTCCCTACTTCAAATTATTTGTTGTTGCCCCTCATGAGTGTGCTCAACATAGCCAGGGAATATGGATTGCATTCTCCTACGACCTCATCCAATGAGATCGACTTCTGTGCTGTCTGCCTGGAGAGGCCATGTACAGTGGCTGCAGAAGGATGCATGCATGAGCTTTGTGTAAGATGTGCACTCTACCTTTGCTCTACAGCCAATGTTTCTTCTGAAATGCATGGCCCTCCTGGTTCTGTCCCTTGTCCCCTTTGTCGACATGGAATTATCTCTTTCGTCAAGTTACCAAGTTTCCAACCAAAAGAAAATAAATTGCATGCGTCTCTCAGCATGTGTACACCATGCATACAACATCCACGTGACATAGATCAATCCTCTTTTTCTCATAATACATCGGAAATTCGAAAAAACCGGGTTGCTTCTGTTTCTTCCGAGATGCTTTGCCCTGTCACCTGTACACCATTTCCATCTGTAGCGATTCCTTTATGTACTTGCAATGATGGTCCTTGTCCGCCATTTGAACCTGGTGAAGATGAAACACAAGATGAATCACCTCGTCACTCACAAGCTTCGACAACAGATCAAGATAAAATGGAAGGACCAAAACTGGTGAAAAAAACATGTTCAAATATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGAACCAATGTAATTCAGAAATAAATGCATGA 1542 0.4293 MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLEKGADVNSRNYCGQTALMQACRHGYWEVVQTLMLYRCNVMKADYLSGRTALHFAAVSGHVRCIRLVVADLVPSAPYETLHARVDADVGDGSNTKRKNEQSELSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTIVSSFPTSNYLLLPLMSVLNIAREYGLHSPTTSSNEIDFCAVCLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVPCPLCRHGIISFVKLPSFQPKENKLHASLSMCTPCIQHPRDIDQSSFSHNTSEIRKNRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFEPGEDETQDESPRHSQASTTDQDKMEGPKLVKKTCSNMFWGRRSCSRENQCNSEINA* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1471 513 Pfam Ankyrin repeats (many copies) 46 97 IPR002110 GO:0005515
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Mtr6g1471 513 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Mtr6g1471 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 384 IPR013083 -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Mtr6g1471 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 513 - -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Mtr6g1471 513 PANTHER HOMEOBOX PROTEIN WARIAI 1 513 - -
Mtr6g1471 513 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mtr6g1471 513 MobiDBLite consensus disorder prediction 462 486 - -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Mtr6g1471 513 Pfam Ankyrin repeats (3 copies) 182 266 IPR002110 GO:0005515
Mtr6g1471 513 MobiDBLite consensus disorder prediction 457 486 - -
Mtr6g1471 513 Gene3D - 157 270 IPR036770 -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat region circular profile. 220 245 - -
Mtr6g1471 513 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Mtr6g1471 513 SMART ANK_2a 220 252 IPR002110 GO:0005515
Mtr6g1471 513 SMART ANK_2a 111 141 IPR002110 GO:0005515
Mtr6g1471 513 SMART ANK_2a 77 106 IPR002110 GO:0005515
Mtr6g1471 513 SMART ANK_2a 44 73 IPR002110 GO:0005515
Mtr6g1471 513 SMART ANK_2a 177 206 IPR002110 GO:0005515
Mtr6g1471 513 Gene3D - 4 156 IPR036770 -
Mtr6g1471 513 SUPERFAMILY RING/U-box 315 375 - -
Mtr6g1471 513 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1471 Mtr-Chr6 24493148 24500353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1471 3 217 Miscellaneous Gene Families AT3G12360 31.441 6.53e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1471 K19044 - gmx:100812809 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1471 6 24493148 24500353 Mtr6g1471 6 24493148 24500353 ECH
Mtr6g1471 6 24493148 24500353 Mtr1g3782 1 49376789 49381121 PCT