Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3782 ATGGGAAATTCTTTCGGATGTTCTGCCTCCGGCGAGAGACTGGTATCGGCGGCGAGGGATGGTGACCTTGTTGAGGCGAAGATGCTTTTGAATTGTAACCCTTATCTTGCTAAATACTCCACTTTTGGTGGTCTTAATTCTCCTCTTCATTTTGCATCTGCAAAGGGTCATAACGAGATTGTTGCATTGTTGCTTGAGAATGGAGCTGATGTTAATTCAAGAAATTATTCTGGCCAGACGGCATTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTGCAAACACTTTTACTCTTCAGATGCAATGTTATGAGAGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCGATGAACGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCGAGTGCTCCTTATGATGTGATACATGCTCGATCAGATGCCGAACAAGGTGGTGGATCAAATGTAAAAGGCAAAAATGAACAAAGTGCTTTGTCCAAGTTTGTAAATAAGACAGCTGATGGTGGTATCACTGCCCTTCACATGGCTTCGTTAAATGGATACTTTGATTGTGTGCAACTGCTACTTGATCTTAATGCAAATATGTCTTCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCTGGAAGCACTCCTTTGCATTACGCCGCATGTGGGGGAAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCAAGTCGGATGGCTTTGAATTGCAACGGGTGGCTTCCTCTTGATATTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCGTTGCTGGCACCCATTTCTGATGCCGTAACACCTTCCTTCCCTCATTCAAATTACTTGTCCTTGCCTCTCATGAGTGTTCTCAACATAGCCAGAGAGTATGGATTGCGATCATCTACAACTTCCTCTGATGAGATTGAATTTTGTGCTGTATGCCTGGAGAGGCCATGTTCAGTGGCTGCAGAAGGATGTGGACATGAACTTTGTGTGAGATGTGCGCTCTATCTTTGCTCGACAAGCAACGTTTCGTCTGAAATGCTTGGCCCCCCTGGCTCTATCCCTTGCCCCCTTTGTAGACATGGAATTGTCTCTTTTGTCAAGTTGCCAGGTTCCCAAGCAAAAGAAAATAAATTACACGTGTCTCTTGGCCTCTGCACTCCATGCATATTACATCCACGCGACATAGATCATCCATCTCTTTCTCACACACCAGAGATCCAAAGAAACTGTGTTGATTCTGTTCCTTCAGAGTTACTCTGTCCTGTTACATGTAGTCCATTTCCATCTATGGCAATGCCTTTATGCACCTGCAACGAAGGTTCGTGTCCATCATTTGAACCACGAGGCGTAGAAACAAGAGACGAATCACCTCGTCACTCACAGACATCAACAACGGATCAGGATAAAATTGAAGGGCCGAAACTGGATAAAACAACTTGCTCGAATATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCGGAAATAAATGCTTGA 1539 0.4438 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPYLAKYSTFGGLNSPLHFASAKGHNEIVALLLENGADVNSRNYSGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAMNGHVRCIRLVVADFVPSAPYDVIHARSDAEQGGGSNVKGKNEQSALSKFVNKTADGGITALHMASLNGYFDCVQLLLDLNANMSSVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDIARMWGRHWLEPLLAPISDAVTPSFPHSNYLSLPLMSVLNIAREYGLRSSTTSSDEIEFCAVCLERPCSVAAEGCGHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFVKLPGSQAKENKLHVSLGLCTPCILHPRDIDHPSLSHTPEIQRNCVDSVPSELLCPVTCSPFPSMAMPLCTCNEGSCPSFEPRGVETRDESPRHSQTSTTDQDKIEGPKLDKTTCSNMFWGRRSCSREHQCNSEINA* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3782 512 Gene3D - 6 134 IPR036770 -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Mtr1g3782 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Mtr1g3782 512 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 512 - -
Mtr1g3782 512 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Mtr1g3782 512 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Mtr1g3782 512 Pfam Ankyrin repeat 178 205 IPR002110 GO:0005515
Mtr1g3782 512 SMART ANK_2a 77 106 IPR002110 GO:0005515
Mtr1g3782 512 SMART ANK_2a 220 249 IPR002110 GO:0005515
Mtr1g3782 512 SMART ANK_2a 111 142 IPR002110 GO:0005515
Mtr1g3782 512 SMART ANK_2a 44 73 IPR002110 GO:0005515
Mtr1g3782 512 SMART ANK_2a 177 206 IPR002110 GO:0005515
Mtr1g3782 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Mtr1g3782 512 MobiDBLite consensus disorder prediction 458 485 - -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Mtr1g3782 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Mtr1g3782 512 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Mtr1g3782 512 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 205 - -
Mtr1g3782 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Mtr1g3782 512 Gene3D - 154 282 IPR036770 -
Mtr1g3782 512 PANTHER HOMEOBOX PROTEIN WARIAI 1 512 - -
Mtr1g3782 512 SUPERFAMILY RING/U-box 315 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3782 Mtr-Chr1 49376789 49381121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3782 10 286 Miscellaneous Gene Families AT1G07710 28.421 6.74e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3782 K19044 - gmx:100793886 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3782 1 49376789 49381121 Mtr1g3782 1 49376789 49381121 ECH
Mtr6g1471 6 24493148 24500353 Mtr1g3782 1 49376789 49381121 PCT