Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3472 ATGGGTGAGGAAGCAATTATAGACAAAGCTCCCTTGATTGATCACTGCACTTCTTCCACTGATGTGTTAGTTGTAGAGCCTCTTAGGAGAACAGGTAATGTATGGAGCGCAGTGGCACATATAATAACTGGGGTGATAGGAGCAGGTGTACTGTCCTTAGCATGGTCTGTGGCACAATTAGGATGGATTGCAGGTCCTCTGTGTATTCTACTCTTTGCAGCAACTACCTTCATTTCAACATACCTTCTTTCTGATTGCTATAGATTTCATGATCCTGAACATGGGAGCATTAGGTGTTCCTCCTACATGGATGCTGTCAAGTTGTACCTAGGAGCAATAAGGGGAAAAGTCTGTGGAGTGTTGGTGCATGTCAGCTTATATGGGACTACATGTGCATATGTCATTACATCTGCAACCAGCATCAGAGCGATTTTGAAATCAAATTGTTATCACAAGGAAGGGCATGAAGCACATTGTAAGTATGGGGATACCATCTATATGATCCTGTTTGGACTTGTTCAGGTCATAATGTCATTCATACCAGACCTCCACAACATGGCATTGCTTTCAGTTGTTGCAGCTGTTATGTCCTTTACATACTCATCTATTGGACTAGGACTTGGCGTCACAAACGTTATAGAAAATGGAAGAATTATGGGGAGTGTAGCTGGAGTACCAGCTTCAAATATTGCAGACAAGTTATGGTTAGTGTTCCAAGCACTTGGTGATATTGCTTTTGCATATCCCTACACTACCATCCTCCTTGAGATACAGGACACTCTAGAGTCTCCTCCAGCAGAAAACAAGACCATGAAAAAGGCCTCCATGATTGCAATCTTGATTACAACATTCTTCTACCTATGTTGTGCATGCTTCGGATATGCAGCTTTTGGAAATCAAACTCCAGGAAACCTCTTGACAGGTTTTGGATTTTATGAACCATATTGGCTCATTGACTTTGCTAATGCTTGCATTGTTCTTCATTTGGTGGGAGGATATCAGATTTATAGTCAACCAACATATACTGCTGCTGATAGATGGTGTTCAAGAAAATATCCCAACAGTGGTTTTGTGAATAATTTCTACCAATTGAAACTGCCTCTTTTGCCGGCTTTTCAGCTGAACATGTTGAGGATATGTTTTAGAACAGCTTATGTGATTTCCACAACTGGACTTGCAATCATGTTTCCTTACTTCAATGAAGTTTTAGGAGTCCTAGGAGCATTAGGCTTTTGGCCTTTGACCATATATTTCCCGGTAGAGATGTATTTTGTACAGAATAAAATTGAAGCTTGGTCTACAAAATGGATTGTTCTTAGGACTTTTAGCTTTGTTTGCCTTCTGGTGACAGTTGTGAGTCTTGTTGGATCACTTGAAGGAATCATAAGTGAGAAACTAAGCTGA 1404 0.4067 MGEEAIIDKAPLIDHCTSSTDVLVVEPLRRTGNVWSAVAHIITGVIGAGVLSLAWSVAQLGWIAGPLCILLFAATTFISTYLLSDCYRFHDPEHGSIRCSSYMDAVKLYLGAIRGKVCGVLVHVSLYGTTCAYVITSATSIRAILKSNCYHKEGHEAHCKYGDTIYMILFGLVQVIMSFIPDLHNMALLSVVAAVMSFTYSSIGLGLGVTNVIENGRIMGSVAGVPASNIADKLWLVFQALGDIAFAYPYTTILLEIQDTLESPPAENKTMKKASMIAILITTFFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPTYTAADRWCSRKYPNSGFVNNFYQLKLPLLPAFQLNMLRICFRTAYVISTTGLAIMFPYFNEVLGVLGALGFWPLTIYFPVEMYFVQNKIEAWSTKWIVLRTFSFVCLLVTVVSLVGSLEGIISEKLS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3472 467 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 7 466 - -
Mtr5g3472 467 Pfam Transmembrane amino acid transporter protein 31 462 IPR013057 -
Mtr5g3472 467 PANTHER OS05G0424000 PROTEIN-RELATED 7 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3472 Mtr-Chr5 43551990 43555747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g3472 28 462 Organic Solute Cotransporters AT5G09220 50.457 1.71e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3472 K24917 - gmx:100786621 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3472 5 43551990 43555747 Mtr5g3472 5 43551990 43555747 ECH
Mtr3g1583 3 27647582 27651196 Mtr5g3472 5 43551990 43555747 PCT
Mtr5g3472 5 43551990 43555747 Mtr3g1582 3 27635357 27638319 PCT