Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3364 ATGGATATATCAGAGTACACAAGAATTGTATTTGATAAAATTCAGAAATTTGAGCCTGAAAATGCTAGAAAGATAATTGGCTATCTTCTTTTACAAGACAATGGCGAACAAGAAATGGCTAGGTTGGCTTCTTGTCCTGACCACATCATCGGTGAAGTCGTCTTTAAGGCCCTTCAAATGTTGGCTGTTAATTCAACCATGATGCCAATTCCGCCACCTAATGTCAACCCTCAACAAGGTTTAAGCCATTTTCCGGCATTATCTCCGTCTTCACCGCTGAACTTTCAAGTTCCATCTTCCTATTGGGATCCACAATCTACCAGCAATGCAAATCCTGAATTTACGGGAATGAATTACATGGATTCTCTTGTAGAACTTCAAAAACAAACACAATTGCTGAGTTTGGAGAATCATTTGGATCATGTAAATACCGGAACTCGAGGTCTTGTTGTTAATGAATACAACAATGGCTTAGATTCTTCTGCTGTTAATTTTGGGGGAAAAGCTACAAAGAGGTTTTCAAATTCAAGCATGTCTGAATTTCCACTCAAGATCTGTCATTATTTCAGTAAAGGTTACTGTAGGCATGGAGGTAACTGTAGATATTTTCATGGCCAAGTTCCTCATGAGAGTTTCTCTCATATGCATGGAAATAATGATAACACTAGTAATGAGGATCCGGTGATTTCACCAGGGTCACTAGCTCAGATAGAGTCTGAAATTATTGAGCTTTTAAAGCAGAGAAGAGGAAATCCAATGTCAATTGCTTCGCTGCCGATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCACATGGTTATTTAACGGAGAGCCAGCGACATGGCAAGTCTGGCTATAGTTTGACAAAGCTTCTCGCGCGACTCAATAGTATTCGGCTAATTGACAGGCCTCACGGACAACATGCAGTGGTTCTAGCTGAAGATGCTCCAAAATACATTCAAAAGGGAGATTCTGTTCAAAATATCAGTGCGTCCCGACAAATATATTTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCAGAATACTTCAACGCATTTGGATATGTTGAAGATGTTAGGATTCCATGCCAGCAGAAAAGAATGTTTGGCTTTGTAACATTTGCTGATCCAGAAACCGTGAGAATGATTTTGGACAAGGGAAATCCTCATTATGTTCGTGGCTCTCGTGTGCTTGTGAAACCTTACAGGGAGAAGACAAAGGTTGTTGAAAGGAGGTACCATGATAGAATGGAGCACTCTGTTTGTTGTCCACATCACTTTGCAAATATCGACTCCGAACTTGACTCAATTCCAAGAAGTTATGGGAACCATAGATCTCTAAGTAGACAGTTGATGGAAGAGCAGGAACAAGCTTTTGAATTGCAAAGGAGACGTCTTGCGCAGCTGCAATTTACCCGACGACCTTTTCCCATTTCACCTCATTTTGGGTTTCCCATGGATGCGTTAAGAGTTCCAGATGATCATTTCAATTTCCAGGCTGTGGAACCTCTAAATCATGCGTTGAATAACAACACCAAGAATACTGACACCGATTCCTCTGGAGGGAATAGCAACGAAGGACTCAATCTCCCCGACAGTCCATTTGCATTTCCAATGGAAAATGATAAATAG 1647 0.4074 MDISEYTRIVFDKIQKFEPENARKIIGYLLLQDNGEQEMARLASCPDHIIGEVVFKALQMLAVNSTMMPIPPPNVNPQQGLSHFPALSPSSPLNFQVPSSYWDPQSTSNANPEFTGMNYMDSLVELQKQTQLLSLENHLDHVNTGTRGLVVNEYNNGLDSSAVNFGGKATKRFSNSSMSEFPLKICHYFSKGYCRHGGNCRYFHGQVPHESFSHMHGNNDNTSNEDPVISPGSLAQIESEIIELLKQRRGNPMSIASLPMAYYDKYKKVLQAHGYLTESQRHGKSGYSLTKLLARLNSIRLIDRPHGQHAVVLAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAEYFNAFGYVEDVRIPCQQKRMFGFVTFADPETVRMILDKGNPHYVRGSRVLVKPYREKTKVVERRYHDRMEHSVCCPHHFANIDSELDSIPRSYGNHRSLSRQLMEEQEQAFELQRRRLAQLQFTRRPFPISPHFGFPMDALRVPDDHFNFQAVEPLNHALNNNTKNTDTDSSGGNSNEGLNLPDSPFAFPMENDK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3364 548 ProSiteProfiles OST-type HTH domain profile. 233 316 IPR025605 -
Mtr5g3364 548 SUPERFAMILY CCCH zinc finger 183 205 IPR036855 GO:0046872
Mtr5g3364 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723
Mtr5g3364 548 Gene3D - 334 413 IPR012677 -
Mtr5g3364 548 Pfam OST-HTH/LOTUS domain 233 310 IPR025605 -
Mtr5g3364 548 MobiDBLite consensus disorder prediction 512 535 - -
Mtr5g3364 548 SUPERFAMILY RNA-binding domain, RBD 344 417 IPR035979 GO:0003676
Mtr5g3364 548 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Mtr5g3364 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 401 IPR000504 GO:0003723
Mtr5g3364 548 Coils Coil 449 477 - -
Mtr5g3364 548 MobiDBLite consensus disorder prediction 512 548 - -
Mtr5g3364 548 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 546 - -
Mtr5g3364 548 SMART rrm1_1 335 405 IPR000504 GO:0003723
Mtr5g3364 548 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 546 - -
Mtr5g3364 548 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3364 Mtr-Chr5 42564070 42570072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3364 - - gmx:100818984 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3364 5 42564070 42570072 Mtr5g3364 5 42564070 42570072 ECH
Mtr3g1423 3 25559165 25563568 Mtr5g3364 5 42564070 42570072 PCT