Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g1423 ATGGATATTTCTGAATGTACAAGGATTGTTTTAGATAAAATTCAAAGATTTGAGCCAGAACATGCTACGAAGATCATTGGATATCTCCTTATGCAAGATAACGGCGAGCAAGAGATTGCTAAATTAGCTTCATTTCCGGATAATTTGATCCGTGAAGTTGCCCTTAAGGCCAGAACTGAGCTTCAAAAGATGGCTACCAGATCGGTAATCTCGTCCGGAAATTCTTCACCGGCAAGTTTTCAGGTTCACTCTCCCTATTACAATCATGGTAATACTAGTCCAGAATTTATGACAATAGGCACCACTGAACATCAAACCCATACTGCATTGTTCGGTTCAGAGAATCATCATCACGTAGATAGTGTAAATTCTACTACTGATAACTATGATTGCTATAATTACTACTTAGAATATGCTTCAGCCGTAGCTAATTTGAATGGAAAAATCAGTAAAAGGTTTTCAAACATGACTGAATTTCCATTCAAAACATGTCACTATTTCAGCAAAGGATATTGCAGGCATGGAAATAGTTGTAGGTTCTATCATCATGGACAAGCTGTTTCTGACATAGTCTCTCATATGTATGGAAACGACGCTGCTGCTAACGACGAACAAGCGATTTCGCCAGGATCACTGGCGCAACTAGAGTCGGAAATCGTCGATCTCTTAAAACAAAGAGGAAATCCTATATCAATTGCTTCACTTCCAATGGCATACTATGATAAGTATAAAAAGGTGTTACAAGCAGAAGGTTACCTAGCTGAGAGCCAACGACATGGCAAGTCCGGCTACAATTTGACCAAGCTTCTTATCCGATTGCGAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATGCGGTGGTTTTGGCGGAAGATGCGCCGAAATTCATGGGAAAGGCAGATTGTCAAAATATCAGTGCATCACAACAAATTTACTTGACATTTCCAGCTGATAGCACTTTCTCAGAGGAGGATGTATCAAACTACTTTGGTACTTTTGGATCTGTTGAAGATGTAAGGATTCCATGCCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGTTGAACCAGAAACTGTTAAAATGATTTTGGATAAGGGAAATCCTCATTATGTTCGAGGATCTCGGGTTCTTGTGAAACCATACAAGGAGAAGCCAAAACTTATTGACAGGAAGTATCCATATAGAGTTGAGCATCATGTCTGTTATTCACCGCGCTATGCAGACATCGACGCTGAAATCGCTTCAAGTCCAAGAAGCTGTGGCAATCCGCGGTATCTGACAAGGCTTCTCCTCGAAGAACAAGACCGAATCTTTGAATTGCAGAGAAGGCGTCTTGCACTGTTGCAAATAGCCCAAAAATCTTTGTCTAGTCCACCCCATTTTGGCATCAACATGAATGCATCAAGAGTTTCAGACGATCATTTCAATGTCCAGGCTACTGAATCTTTTAGTTATCTACAAAACGAGCAAGCCGAGTACACAGATGCCAATAACTCCGATAAGGACAGTGAAGGACTGAATCTCCCGGACAGCCCGTTTTCGTTTCGAATAGACACCGGAATTTCAGCAATGATGTAG 1587 0.4108 MDISECTRIVLDKIQRFEPEHATKIIGYLLMQDNGEQEIAKLASFPDNLIREVALKARTELQKMATRSVISSGNSSPASFQVHSPYYNHGNTSPEFMTIGTTEHQTHTALFGSENHHHVDSVNSTTDNYDCYNYYLEYASAVANLNGKISKRFSNMTEFPFKTCHYFSKGYCRHGNSCRFYHHGQAVSDIVSHMYGNDAAANDEQAISPGSLAQLESEIVDLLKQRGNPISIASLPMAYYDKYKKVLQAEGYLAESQRHGKSGYNLTKLLIRLRNSIRLIDRPHGQHAVVLAEDAPKFMGKADCQNISASQQIYLTFPADSTFSEEDVSNYFGTFGSVEDVRIPCQQRRMFGFVTFVEPETVKMILDKGNPHYVRGSRVLVKPYKEKPKLIDRKYPYRVEHHVCYSPRYADIDAEIASSPRSCGNPRYLTRLLLEEQDRIFELQRRRLALLQIAQKSLSSPPHFGINMNASRVSDDHFNVQATESFSYLQNEQAEYTDANNSDKDSEGLNLPDSPFSFRIDTGISAMM* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g1423 528 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 71 - -
Mtr3g1423 528 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 69 528 - -
Mtr3g1423 528 ProSiteProfiles OST-type HTH domain profile. 211 294 IPR025605 -
Mtr3g1423 528 CDD RRM_AtC3H46_like 313 382 IPR034365 -
Mtr3g1423 528 Pfam OST-HTH/LOTUS domain 211 288 IPR025605 -
Mtr3g1423 528 Gene3D - 318 389 IPR012677 -
Mtr3g1423 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 378 IPR000504 GO:0003723
Mtr3g1423 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 386 IPR000504 GO:0003723
Mtr3g1423 528 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 69 528 - -
Mtr3g1423 528 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 71 - -
Mtr3g1423 528 SMART rrm1_1 312 382 IPR000504 GO:0003723
Mtr3g1423 528 ProSiteProfiles Zinc finger C3H1-type profile. 158 186 IPR000571 GO:0046872
Mtr3g1423 528 SUPERFAMILY RNA-binding domain, RBD 322 402 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g1423 Mtr-Chr3 25559165 25563568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g1423 - - gmx:100806206 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1423 3 25559165 25563568 Mtr5g3364 5 42564070 42570072 PCT