Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3348 ATGGAATCTCCACAATCTGTTGTGTCACCATTCAAGAGTTCTATCTTGGGACATGGTGAGAAGTATAAGTCTGATGATTTAACACAAAGCTCTAGTCCTTTGTCTAAAGACATTGAGGTTAATGGAAAAGAAGCTGTTGCAGTGTCTAATCCAGAGGAATTTATTGGAGTAGTTGATGTTTACATACATCAAGCTAGGGACATTCATAAGATCTGCATATACCACAAGCAAGATGTTTATGCTAAGATTTCTTTGACTAGTGATCCTGAAAATTCTGTCAATACCAAGATTATCAATGGAGGAGGAAGAAATCCCGTTTTTAACGATAACCTTCGTCTAAGTGTTAGGACCGTCGATTCTTCTCTCAAATGTGAGATCTGGATGCTTAGCAGGGTGAAGAATTATCTTGAAGACCAACTACTTGGTTTTGCTTTGGTACCTTTGTCCGATGTATTGATGAAAGATGGAAAACTAGAGAAAGAGTTCTCTCTTTCTTCGACTGATCTATTCCATTCACCAGCAGGTTTTGTTCAGTTGTCACTTGCTTACAACGGCGCTTTGCCTGATGTTATGGCAATTTCAGCAATGCCTAATACTGAACTGGACAGAAACGGCACCGAGAAGGACTCCAAAACAAGTGAGTCGCTCGTGAGGGATTTAGATAAAATTGAGTTCCCAAATCCAAAAATTGTAAATGAAGACCACTTAATGGTTTCAGAATACTTTGGTACAGATAGCTTGGCAACTACTGATACTGAAAATCTTAGTTCAGAAAAAGGTGTTCAACTTGTGGAAAGCTTCTCAGTATGTAGTGTTGAATCTGTTCAACCTCCTAAGGTTGAATCTCCACCTAGTAGTAATGGAGTTGTTTCCTCTCCTTCAGTGGCTGCAAGCTCAAAATCACGTGCTGCTACTAAACCTCCCAATCAGGAGCAAATTTCAGGTACAAAAAAGAAAAATGTTGATCTCAAACACGGGGAGAGTGATTCCTCGAACACGTTGCTGAATGAGTCATTTCCAAGTCCTGTTGTGAGTGTGAATATTGAGCCAGAGCCAAAGATGGTGCAGCAGGATATAGTAGACATGTACTTGAAAAGTATGCAGCAATTTACCGAGTCATTAGCAAAAATGAAGCTTCCTATGGACTTTGAAAATGGACCAACTAGTTCAGGAAACTCAACCTCTGAACAGAAACTACAATCTTCAAAGAGTAGTAACTCACGCGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1254 0.3971 MESPQSVVSPFKSSILGHGEKYKSDDLTQSSSPLSKDIEVNGKEAVAVSNPEEFIGVVDVYIHQARDIHKICIYHKQDVYAKISLTSDPENSVNTKIINGGGRNPVFNDNLRLSVRTVDSSLKCEIWMLSRVKNYLEDQLLGFALVPLSDVLMKDGKLEKEFSLSSTDLFHSPAGFVQLSLAYNGALPDVMAISAMPNTELDRNGTEKDSKTSESLVRDLDKIEFPNPKIVNEDHLMVSEYFGTDSLATTDTENLSSEKGVQLVESFSVCSVESVQPPKVESPPSSNGVVSSPSVAASSKSRAATKPPNQEQISGTKKKNVDLKHGESDSSNTLLNESFPSPVVSVNIEPEPKMVQQDIVDMYLKSMQQFTESLAKMKLPMDFENGPTSSGNSTSEQKLQSSKSSNSRVFYGSRAFF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3348 417 ProSiteProfiles C2 domain profile. 40 162 IPR000008 -
Mtr5g3348 417 PANTHER EXPRESSED PROTEIN 1 417 - -
Mtr5g3348 417 Gene3D C2 domain 52 211 IPR035892 -
Mtr5g3348 417 MobiDBLite consensus disorder prediction 275 338 - -
Mtr5g3348 417 MobiDBLite consensus disorder prediction 381 406 - -
Mtr5g3348 417 SMART C2_3c 57 160 IPR000008 -
Mtr5g3348 417 MobiDBLite consensus disorder prediction 385 406 - -
Mtr5g3348 417 MobiDBLite consensus disorder prediction 275 316 - -
Mtr5g3348 417 MobiDBLite consensus disorder prediction 1 34 - -
Mtr5g3348 417 Pfam C2 domain 57 162 IPR000008 -
Mtr5g3348 417 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 52 184 IPR035892 -
Mtr5g3348 417 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3348 Mtr-Chr5 42412341 42415277 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3348 - - gmx:100781587 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3348 5 42412341 42415277 Mtr5g3348 5 42412341 42415277 ECH
Mtr3g1414 3 25435065 25437830 Mtr5g3348 5 42412341 42415277 PCT