Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3333 ATGTCACATAAATTTTTTGTTCTTTTTTTATTCTTATTATTCATCTCAACAAGTGTTTGTGTTCATGAAGAAGGTTTCATCTCTGTGATTATATCTGATAAGGGTCTTGACTTTGCCAAAGATATTCTTATAAACCAAACTATTGCATCTATAGTTCTTTCTCAGCTACCACAAATTGAGAAATCTGTTCAAGTCCCTCTTGTTGGAAAAGCTCATGTGATTCTTTCTGAGATCACAATCAAGAATATTCAAGTTAGTTCTTCATATGTTGAAACTGGTGATACTGGTATTAATGTTGTTGTTTCGGGTGCTACTGCTAATTTGAGCTTGAATTGGAGGTATACTGTTAGTAGTTGGTTAATCCCAATTGGAATTTCAGATAGTGGAACTGCCACTGTTAAGGTTGAAGATTTGCAAGTGGGGCTTACTGTAAATTTAAGGAACCAAGAAGGAACTCTTAAGCTGATTCTCTTAGATTACGGATGTGATGTTGGAGAATTATCTATAAAGATGAACGGTGGAGCAGCTTGGCTTTATCAAGTTCTAGTTGATGCTTTTAAAGGAAATATAGGATCGGCAGTTGAAGATGCTGTTTCTAAGAAAATAAGAGAAGGGATACCAACACTTGACAATCTACTGCAAACTCTTCCGAAGACAATTTCAATAGATGAAACCGCTGCTCTAAATATTTCTTTCGTTGACAATCCTGTGCTGAGTAATTCTTCTATTGAACTTGAAATCGATGGTTTGTTCACTGAGAGAAATGATGTTTTAGTACCTCAAGTTTACCACAGAAGATCTGACATTTCTGTTTCCAGTGGTGGTTTACCAAAGATGATAAATATATCATTACATGAAAATGTTTTCAAATCAGCGTCCGAAGTTTACTTCGCAGCAGATGCTTTGCAATGGATACTTGATGAACTACCTAATCAGGCCCTTTTGAACACTGCTGACTGGAAAATTCTCATTCCTCAATTATACAAGCAATATCCAAATGATGACATGAATCTTAATGTCTCTGTATCTTCTCCACCGGTTATAAAAGTGTCAGATCAAGATGTAGGAGTTACCATTTCCATAGATTTAATCGTTGATGTTTTGGAAGCTGGTGAAGTCATACCGGTTGCATGCATCTCTGTGGATATTAGTGCTTCGTGTGATGCGGAAATTGTACGGAACAGTCTTACTGGTCGGCTTAAATTGAAGAAGTTCTCCACAGACTTGAAATGGAGCAAAATAGGGAAACTTCACATGAGTGTAATTCAGTCATTATCATCAACTGCCCTCAAAACCGTCCTCATACCATACCTAAACTCGCAGTTAAAGAGGGGAATTCCATTGCCGATTCTGAATGGTTTTACCCTTGAAAATGCGCGAATCTTCTACACTCCCCCATGGATTGCAGTGTGTAGTGATGTTACCTTCTTAGGAGACTACTATCTTAGACATCATCTAGCTTATGTATCATAA 1473 0.3707 MSHKFFVLFLFLLFISTSVCVHEEGFISVIISDKGLDFAKDILINQTIASIVLSQLPQIEKSVQVPLVGKAHVILSEITIKNIQVSSSYVETGDTGINVVVSGATANLSLNWRYTVSSWLIPIGISDSGTATVKVEDLQVGLTVNLRNQEGTLKLILLDYGCDVGELSIKMNGGAAWLYQVLVDAFKGNIGSAVEDAVSKKIREGIPTLDNLLQTLPKTISIDETAALNISFVDNPVLSNSSIELEIDGLFTERNDVLVPQVYHRRSDISVSSGGLPKMINISLHENVFKSASEVYFAADALQWILDELPNQALLNTADWKILIPQLYKQYPNDDMNLNVSVSSPPVIKVSDQDVGVTISIDLIVDVLEAGEVIPVACISVDISASCDAEIVRNSLTGRLKLKKFSTDLKWSKIGKLHMSVIQSLSSTALKTVLIPYLNSQLKRGIPLPILNGFTLENARIFYTPPWIAVCSDVTFLGDYYLRHHLAYVS* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3333 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 27 240 IPR017943 GO:0008289
Mtr5g3333 490 Gene3D - 28 461 - -
Mtr5g3333 490 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 5 490 - -
Mtr5g3333 490 PANTHER OS06G0309200 PROTEIN 5 490 IPR045897 -
Mtr5g3333 490 Pfam LBP / BPI / CETP family, N-terminal domain 35 206 IPR017942 GO:0008289
Mtr5g3333 490 PIRSF Lipid_binding_protein 4 480 IPR030675 GO:0005615|GO:0008289
Mtr5g3333 490 Gene3D - 34 214 - -
Mtr5g3333 490 SMART bpi2_2 274 479 IPR001124 GO:0008289
Mtr5g3333 490 SMART bpi1_3 31 256 IPR017942 GO:0008289
Mtr5g3333 490 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 241 475 IPR017943 GO:0008289
Mtr5g3333 490 Pfam LBP / BPI / CETP family, C-terminal domain 276 461 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3333 Mtr-Chr5 42237489 42242273 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3333 K05399 - gmx:100804747 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3333 5 42237489 42242273 Mtr5g3333 5 42237489 42242273 ECH
Mtr3g1364 3 24792934 24801112 Mtr5g3333 5 42237489 42242273 PCT