Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g3301 ATGGAATCACCTACCTTCGTTTCAAAAGCGAGGACAGCCTTCAATTCCGCTGCTGCAAAAGCGGAACGTGTTCTTCTCGACTTCAAATCAGATCGAGATCAAGATAAGCAATCTCCTAATAGCTTAACAAGACAATCTCAAATTGAATCTCCGAGCAGTGACAACGAATCTAAGCTTCGTGGTGAATCGAAGCATATAAAGTGGAGGCCAAAGAATATAGGGATAAAGCAAGATTGGCAAGATAAGTTTAAGAACATTCGGTTAGGAAGAAAAGAAGCTGAAGATACAGATAAAATTGGGGATGCAAACATGGCAATTCCATTTTATGATGAAAATTTGTATATCCTGAACGTGAAGAATGATCTTGAGGCCAAGGCATCAGAAGCAATTCCGACTGTAGAAGCCCTAACTGCTGCGACTAAAGATCCCATTCCTCCATCCTCTGTGCTGAAACAATTGGCTATGGCTGTTGAGGCTGGAAGTAAGACAAAGTCCATGAAAGATGTTATAGCTTCATCAGGAGGTTCTTCACCTGCCAAGGAGAGGGGAGGCTTAAGTCTCTCTGCAGTCAAGGCTTTAGTGTTGCGAGAGAAGGAGGATAAACTTACCTCTGAGTTTAGTAGCAATGAGAAAGTTGTGCATTTGATCAATTCTCTTTTTGATCCAGAGGGAGATTTCCTTAGAAGGAAGATCAATTCCAACCCAGAGGGAAATGATATGACATCTTTGCCAAGAGATATTCACGGTGCTCCTCCTGAAAGTCTTGTTGTGAAGTTGGCTGAAATTGTTGGAAACTACAAGACCGTACGAAAAATGGCTCTGTTCTGGTGCAGGGTTGTTGAAGAACTGAGAAAATTTTGGTCTGAAGAACAATATTTACCAGGAGTCCCGCAGAATGATATTCCAGATCTGAAAACATGTCTTCTGTATCAACACTTTCAAGTAATTAATTGTTGTATTTCTCGAAAGAGGCTCCGTATCATTGCGACTGAATCTCTAGAGTCTATGATGATGCAAGCTAGTTCAAACATTAAAGAATCAGCCAATGATGACGGCGGAGCTCCTGCAAACCCTGTTTTATATGCTAGATTAAACACAGGGGAACATGTTCTTCGTCTTGGTGCTGGTCGCCGGTCTGGTGATTTGACATTGTTGGAAACTGGCGAGCCTGTGTACTCTCCTGTCACCCAGGAAGGACCTTTGCTTACAGAAGATTTAATCAGAGAAACAGAGGAGTTTGTCCTGCGGACTGGGAGTGTTGGTGCTGGCTGCTCGCAACTGCTCTCAGATATGCAGGCTTTCAAGGCTGCGAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCACCTCCTGATTGGACAGACAATGAGGCTAGTATTGAGGACAGTGATGTTTTTGACAGTGGCGAGTCATTGTCGAGCAAAGGCCAGCTAAGTCGGCGTATGCAAAAAGAAGGTAATTTATGGCATGAATTGTGGGCAACATCTAAACCAGTACCAGCTGTTAAGCAGGCACCTCTTTTCGATGAGGATTTGGCAGTAGAGGGCATCCTCCATGCATTTGAGGACATCCACCCTTTTGAGCTTTTTGGACAGTTGTTTGTCTCTTTACTTGGGTTAGGATTTGCGATTGCTGAACCTATGCTGTCTAGTAGCAAGGACTTCTCAAAGTTGTTCTGTGACTGCAAGGAGTACATAGTTGCTACATGCCAAAGCAACAAATGGAGTGAGAAAGTTGATGACCTTGTCCAGGTATATGAAACAGTAGAGACAATGTTAATGAATCCTGAAGAAGCATTGAAGATGATTAAACAGTCAGAAGAATCAATTACCGTTACTGATGAACCAAAGAGCCGGTTTAAGAGGCTGAGCCTTATCTTCAGCGGCAAAGATAAAGTATTGAAAAAGCCCGTGTCAAAAGATCAAATAAATGATGAAGAAAAGTCATCACGACAATCTTTCTCAAGTTTCTTTGAAAACAAGTCATCTTTATTTTCAAAGAAGCCTCCTAGGTCTGGAAGCCCGTCTCCTTCGGAGAAACCTTCAATTGAAACCGATTGGGCAGTTGTTTAA 2079 0.4247 MESPTFVSKARTAFNSAAAKAERVLLDFKSDRDQDKQSPNSLTRQSQIESPSSDNESKLRGESKHIKWRPKNIGIKQDWQDKFKNIRLGRKEAEDTDKIGDANMAIPFYDENLYILNVKNDLEAKASEAIPTVEALTAATKDPIPPSSVLKQLAMAVEAGSKTKSMKDVIASSGGSSPAKERGGLSLSAVKALVLREKEDKLTSEFSSNEKVVHLINSLFDPEGDFLRRKINSNPEGNDMTSLPRDIHGAPPESLVVKLAEIVGNYKTVRKMALFWCRVVEELRKFWSEEQYLPGVPQNDIPDLKTCLLYQHFQVINCCISRKRLRIIATESLESMMMQASSNIKESANDDGGAPANPVLYARLNTGEHVLRLGAGRRSGDLTLLETGEPVYSPVTQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASIEDSDVFDSGESLSSKGQLSRRMQKEGNLWHELWATSKPVPAVKQAPLFDEDLAVEGILHAFEDIHPFELFGQLFVSLLGLGFAIAEPMLSSSKDFSKLFCDCKEYIVATCQSNKWSEKVDDLVQVYETVETMLMNPEEALKMIKQSEESITVTDEPKSRFKRLSLIFSGKDKVLKKPVSKDQINDEEKSSRQSFSSFFENKSSLFSKKPPRSGSPSPSEKPSIETDWAVV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g3301 692 MobiDBLite consensus disorder prediction 39 54 - -
Mtr5g3301 692 MobiDBLite consensus disorder prediction 663 683 - -
Mtr5g3301 692 Pfam Rab3 GTPase-activating protein catalytic subunit 371 524 IPR026147 -
Mtr5g3301 692 MobiDBLite consensus disorder prediction 28 63 - -
Mtr5g3301 692 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 691 IPR045700 GO:0005096|GO:0043547
Mtr5g3301 692 MobiDBLite consensus disorder prediction 663 692 - -
Mtr5g3301 692 MobiDBLite consensus disorder prediction 639 658 - -
Mtr5g3301 692 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g3301 Mtr-Chr5 41884679 41892589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g3301 K18270 - gmx:100818643 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g3301 5 41884679 41892589 Mtr5g3301 5 41884679 41892589 ECH
Mtr3g1315 3 24125286 24131989 Mtr5g3301 5 41884679 41892589 PCT