Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2716 ATGGCTCACTGCTCTATCAAGGATACCGGTATAGCAGAATCCCAGTTGAGTTGGTGGTATCTCGTATCATCTTACGAAGAACTCAAAACAGGGAAACAAAAGGTGAAAACCTCGGCCGAGACTTTCAGTTGTCCGTACTGCCCCGAGAGGAAACAGGATTATAAGTTAAATGAACTCCTGAATCATGCCACCGGGATTGGTCGGAGTAGTTCAGAGAAGAGAAGTGCTAAAGAGAAGGGTAGTCATTTGGCTTTGGTAAAATATTTGGAGCAAGACCTTAACAGTAAGGATGGTGCATCGAGACCTATAGATCAAGGTACGAACACAATAAGTCCAGGACAGACAGTAATGTCTCACTGTTCTATCAAGGATACCGATATAAGTTGGTGGTATGTAGATACAGCTTATGAAGAGCTCAAAAATGGAACTCGGAATGTGAAAACCTCAGACGGGACTTTCATATGCCCGTACTGCCCTAATAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCTTTTATGGTTGGTCGGAGTAGTTCAGAAAAGAGAAGTGCAAGAGAAAGAGCTAATCATCTCGCTTTGTTGAAATATTTGGAAAAGGATATTACAAGTATGCCTGGACCGTCAAAGCCTGTCGATAAAGGTACAAAATTGATAAACCAAGGACAAACTGTCTCGGCTCCATGCTCTAACAAGGATACCGGTTCAAGTGATCCTCGAATAAGTTGGTTGTATGTAGATAAACTTTATCAAGAACTCAAGAATAGAAGTCTCAAAGTGAGAATCTCAGACGATGCTTTCACTTGTCCATACTGCCCGAAAATGAAAAAACCGGACTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTCGGTCAGAGCAGTTCGCAAAAGAGAAGTGTCCGAGAGAAGGCAACTCACCTGGCTTTAATGAAATATTTGAAACAGGATATTATATATGTGCCTGCTCCATCAAAACCTGTGACTGAAGGTGATTCTTCTGGAGCCATGATACAAAGCCGAGAAGAAAATGCGACGAATCGCTGCTCCGACAAAGATTCTGATAAAAGTGCATCTCAAATAAATTTAGGGCAATTAAAAAGAACATATGAACAGCTCAAAAAGGGGATTCAAAACGTGAGAACCTCAGATAAGACTTTCACTTGCCCATACTGCCCTAATAATAAAAGGATAAAACGGGATTACGTGTACAGGGAAATCCTTGAACATGCTTCCGGGGTGGGTTGGAGTATCTCACAAACTAGAACTGACATTGAAAAGGCGGATCATCTGGCTTTGGTCAAATATTTGAAAAAGGATCTTATAAATGTCGGTGGTCCTTCAAAACCAACAGAGAGAGGCACCATAACGTCGAACCGAGGAGTAACTGTAACAGGTCGCCACTCTGAGAAGGATACTAATAATAGTGCATCTCAAATAAATGCGTTGTTTGTAAATAAATCCTATGCAGAACTCAAGAAGGGAGTTCACAAGGTCAAAACATCAGAAGATACTTTCTCATGTCCGTATTGCCCTAAGAGAAAATGCGATTATAGGTACAGCGAACTCCTTAATCATGCTTTAGGGGTAGGTCAAAGTGACGCACAAAGGAGAAGTGTATTGGAGAAGGCCAACCATCTAGCTTTAGTGAAATATTTGGAAAAGGATCTTATGACTATGAATGTGGAACGTCCATTAAAGCCTGCAAACAAATATTTGGAAAACAATCTTATGAATGTGGAACAAAATCGAACAAAACCAGTGAATGAAAACATTCTTGTCAATTCTGAAAGGCAGTTTGTATGGCCATGGACTGGGATTGTGGTTAATATTCCCACTAGCCAAACCGAAGATGGACGATGTATTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATACCGAATAAGGGGTTTTAATCCACGTAGAGTCAGAACGCTTTGGAATTCATGGGGTCACACCGGAGCTGCAGTTGTGGAATTCAATAAAAGTTGGCTAGGGTTATATAATGCATTGGCATTTGAAAGGGCGTATGAATTAGATTGTCACGGGAAAAAGGACTGGCTTTCTTATACTGAACAAAAATCCGGTCTGTATGCGTGGGTTGCCCGAGCTGATGACTACAAAGTGAACAACATAATCGGGGAGCAACTACAAAAGATGGATGTTAAAACAATACCTGAAATCATGGAGCAAGATGCTAGAAGGTTCAATAGACTCGTGCAGAGTATGCATAACATTCTTCAAGTAAAGAACAACAAGATAAAAGAAATGGAAGTAGTATGCAATGAAATTACACTTCGCATGGACATTGTGATGGGCGAAATAGACAGACTTGCTCAATCTCACAGTCAAGAGATGAAGAAAATACAGTCAAGTGCAAATCAACACTTTCAGAGTGTTTTGAATGGTCATGAAAGGCTTAAGTTGCAGCTGGAATCTCAGAAAAGAGAACTTGAGTTGCGAAGAATTGAACTGGAAAAACGTGAGGCACGTAATGAAAGTGAGAGGAAAAAGTTGGATGAAGAGATTAACAAGACTGCAACGAAAAACCACTTTCTTCAAATGGCTGCTATGGAGCAACAAAAAGCTGGTGAAAATGTTTTGAAACTTGCCGCAGATCAAAAGCGGCAAAAAGAACAACTCCATGCCAAAATCATCCAGCTTGAAAAACAACTAAATGTGAAACAAAAACTGGAATTGGAGATTCAGCAACTAAAAGGAAAACTAAATGTCATGAAGCACATGGAAGATGATGGAGAGCTTGATGTTCTGGATATGATGGATGCCTTACATATAGATTTAAGAGAGAAGGAACAGTCACTTCGAGACATGGACGCATTGAACCAAACTCTGATCATTAAAGAGCGTAAGAGCAATGATGAACTGCAGGAAGCTCGAAAGGAATTGATTACTACCATTAAAGAGATGCCGAGTCGTGCCGATATTCGTGTGAAGAGAATGGGGGAGCTAGACTTTAGACCATTTCTAGAAGCTATGAAGAAAAAATATAATGAAGATGTTGCAGAAGATAGAGCTTCTGAACTGTGTTCGTTATGGGAAGAGTATCTGAAGGACCCTGACTGGCATCCATTTAAAATTTCTACAATCGAAGGGAAACATCAGGAAGCTATAGACGATGAAGATGAAAAGCTGAATGAACTGAGAAACGAGATGGGCGAAGAAGTTTACAAAGCTGTGGTGGCAGCATTGAAAGAGATAAATGAATATAATCCAAGTGGGCGGTACATAACCTCAGAATTATGGAATTATGCAGAGGGAAAGAGAGCGACTTTGCAGGAAGGGGTGAAAGTTTTATTGAATCAGTGGAAATTGAATAGACAAAAAAGGGGAATGATGTGA 3369 0.4046 MAHCSIKDTGIAESQLSWWYLVSSYEELKTGKQKVKTSAETFSCPYCPERKQDYKLNELLNHATGIGRSSSEKRSAKEKGSHLALVKYLEQDLNSKDGASRPIDQGTNTISPGQTVMSHCSIKDTDISWWYVDTAYEELKNGTRNVKTSDGTFICPYCPNRKQDYLYRELLEHAFMVGRSSSEKRSARERANHLALLKYLEKDITSMPGPSKPVDKGTKLINQGQTVSAPCSNKDTGSSDPRISWLYVDKLYQELKNRSLKVRISDDAFTCPYCPKMKKPDYVYREILEHASGVGQSSSQKRSVREKATHLALMKYLKQDIIYVPAPSKPVTEGDSSGAMIQSREENATNRCSDKDSDKSASQINLGQLKRTYEQLKKGIQNVRTSDKTFTCPYCPNNKRIKRDYVYREILEHASGVGWSISQTRTDIEKADHLALVKYLKKDLINVGGPSKPTERGTITSNRGVTVTGRHSEKDTNNSASQINALFVNKSYAELKKGVHKVKTSEDTFSCPYCPKRKCDYRYSELLNHALGVGQSDAQRRSVLEKANHLALVKYLEKDLMTMNVERPLKPANKYLENNLMNVEQNRTKPVNENILVNSERQFVWPWTGIVVNIPTSQTEDGRCIGESGSKLRDEYRIRGFNPRRVRTLWNSWGHTGAAVVEFNKSWLGLYNALAFERAYELDCHGKKDWLSYTEQKSGLYAWVARADDYKVNNIIGEQLQKMDVKTIPEIMEQDARRFNRLVQSMHNILQVKNNKIKEMEVVCNEITLRMDIVMGEIDRLAQSHSQEMKKIQSSANQHFQSVLNGHERLKLQLESQKRELELRRIELEKREARNESERKKLDEEINKTATKNHFLQMAAMEQQKAGENVLKLAADQKRQKEQLHAKIIQLEKQLNVKQKLELEIQQLKGKLNVMKHMEDDGELDVLDMMDALHIDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELITTIKEMPSRADIRVKRMGELDFRPFLEAMKKKYNEDVAEDRASELCSLWEEYLKDPDWHPFKISTIEGKHQEAIDDEDEKLNELRNEMGEEVYKAVVAALKEINEYNPSGRYITSELWNYAEGKRATLQEGVKVLLNQWKLNRQKRGMM* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2716 1122 Coils Coil 804 848 - -
Mtr5g2716 1122 Pfam XH domain 988 1118 IPR005379 -
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 401 456 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 117 162 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 50 106 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 516 1122 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 161 223 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 472 517 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 351 398 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 229 276 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER RIBONUCLEASE P SUBUNIT P38 278 334 IPR045177 GO:0080188
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 117 162 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 229 276 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 516 1122 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 106 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 278 334 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 472 517 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 161 223 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 401 456 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Mtr5g2716 1122 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 351 398 - -
Mtr5g2716 1122 Pfam XS zinc finger domain 392 437 IPR005381 GO:0031047
Mtr5g2716 1122 Pfam XS zinc finger domain 271 313 IPR005381 GO:0031047
Mtr5g2716 1122 Pfam XS zinc finger domain 511 553 IPR005381 GO:0031047
Mtr5g2716 1122 Pfam XS zinc finger domain 155 196 IPR005381 GO:0031047
Mtr5g2716 1122 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Mtr5g2716 1122 CDD RRM_like_XS 603 710 IPR005380 GO:0031047
Mtr5g2716 1122 Gene3D XS domain 596 765 IPR038588 -
Mtr5g2716 1122 Pfam XS domain 600 711 IPR005380 GO:0031047
Mtr5g2716 1122 Coils Coil 951 971 - -
Mtr5g2716 1122 Coils Coil 874 918 - -
Mtr5g2716 1122 Coils Coil 1040 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2716 Mtr-Chr5 35395096 35403169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2716 - - gmx:100790814 1499.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2716 5 35395096 35403169 Mtr5g2716 5 35395096 35403169 ECH
Mtr3g2055 3 33928853 33936409 Mtr5g2716 5 35395096 35403169 PCT