Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2673 ATGGCTACTCAAGAGGTTAATAAGCCTCTTTCACTTCCTCCATACCCTGAGATGATTATGAAGGCACTGGAAGCACTGAATGAACCAAATGGTTCAAACAAATCATCAATTTCAAACTACATAGAATCAATCTATGGAGAATTACCAGAAGGCCATTCAATTGTTCTTGCAAATCACCTTAACCAGATGAAGGATAATGGTGACCTTGTTTTTGCAAAGAACAACTACATGAAGCCTGATCCAAATGCACCACCAAAGAGAGGACGTGGAAGACCACCAAAGCCAAAGGATCCATTGGCTCCACCACCAGCTGCTGTTCTGTCCCCACCAAGGCCAAGAGGTCGTCCTCCTAAGGACCCTAATGCACCTCCAAAGACCCCTAAGCCTGCTTCAAGTGGAAGAGGAAGGGGTAGGCCAAAGAAGGTTCAAAGGACTGAGAATGTTTCAAATCCAAGTGGTGGAGATGGTGATGGTGCTGGTGCTGGTGCTGAGGTTGATGATGATGATGCTGCTCCAAGTGTTGCTGCTGTTGCTGTTCCAACTACTAGTGGAAGGGGAAGGGGTAGGCCTCCTAAAGTTAAGCCTCAGATGACTGAAGTGAGTGTTGAATCATAG 615 0.4618 MATQEVNKPLSLPPYPEMIMKALEALNEPNGSNKSSISNYIESIYGELPEGHSIVLANHLNQMKDNGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDPNAPPKTPKPASSGRGRGRPKKVQRTENVSNPSGGDGDGAGAGAEVDDDDAAPSVAAVAVPTTSGRGRGRPPKVKPQMTEVSVES* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2673 204 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Mtr5g2673 204 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Mtr5g2673 204 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Mtr5g2673 204 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g2673 204 PANTHER HISTONE H1 1 200 - -
Mtr5g2673 204 PANTHER HMG-Y-RELATED PROTEIN A 1 200 IPR031059 GO:0003677|GO:0005634
Mtr5g2673 204 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Mtr5g2673 204 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Mtr5g2673 204 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Mtr5g2673 204 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Mtr5g2673 204 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g2673 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g2673 204 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr5g2673 204 PRINTS High mobility group protein (HMGY) signature 101 112 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr5g2673 204 PRINTS High mobility group protein (HMGY) signature 112 123 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr5g2673 204 Gene3D - 8 89 IPR036388 -
Mtr5g2673 204 MobiDBLite consensus disorder prediction 72 204 - -
Mtr5g2673 204 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Mtr5g2673 204 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2673 Mtr-Chr5 34781798 34783214 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2673 - - mtr:MTR_5g078330 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2673 5 34781798 34783214 Mtr3g2002 3 33139161 33140705 PCT