Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2002 ATGGCTACTGGAGTGGTTATTAATAAACCTCTTTCAATTCCATCATACCGTGAGATGATTTTGAAGGCAATAGAAGGATTAAATGAAGAAAATGGTTCAAACAAATCATCAATTTCCAAGTACATAGAATCCACATACGGTGGATTGCCTCAAGGACACAAGGTACTACTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGTGAATTAGTATTTTGGAAAAACAACTACACCAAGCGTGATCCAAATGCTCCACCTAGAAGGGGCCGTGGAAGACCACCCAAGGCTAAAGAGTCTTTTTCGTCGGGAGCCATGTACTCACAACCCAAGCCTAGAGGCCGTCCGCCAAAGGATCCAAATGGCCCACCAAAGTCTCCACAAATGAAGGCTCCTGTTGGGACAGGAAGACCTAGAGGTCGGCCCAGGAAGATGTCTCGGCCAACTGGAGCCTTTGACGGACCATTGCCTTTGGCTTTAGGGACCGGAGGTAGTGGGAGGCCTAGGGGTAGGCCTCCAAAGATGAAATCCACAACATTGGCTGAAATTAACGCTTAA 555 0.4703 MATGVVINKPLSIPSYREMILKAIEGLNEENGSNKSSISKYIESTYGGLPQGHKVLLNLHLARMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKAKESFSSGAMYSQPKPRGRPPKDPNGPPKSPQMKAPVGTGRPRGRPRKMSRPTGAFDGPLPLALGTGGSGRPRGRPPKMKSTTLAEINA* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2002 184 Pfam AT hook motif 109 120 IPR017956 GO:0003677
Mtr3g2002 184 Pfam AT hook motif 165 176 IPR017956 GO:0003677
Mtr3g2002 184 Pfam AT hook motif 88 98 IPR017956 GO:0003677
Mtr3g2002 184 Pfam AT hook motif 135 145 IPR017956 GO:0003677
Mtr3g2002 184 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Mtr3g2002 184 MobiDBLite consensus disorder prediction 81 95 - -
Mtr3g2002 184 Gene3D - 9 97 IPR036388 -
Mtr3g2002 184 MobiDBLite consensus disorder prediction 112 126 - -
Mtr3g2002 184 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Mtr3g2002 184 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Mtr3g2002 184 PRINTS AT-hook-like domain signature 163 173 IPR017956 GO:0003677
Mtr3g2002 184 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Mtr3g2002 184 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Mtr3g2002 184 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Mtr3g2002 184 SMART AT_hook_2 165 177 IPR017956 GO:0003677
Mtr3g2002 184 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr3g2002 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr3g2002 184 PRINTS High mobility group protein (HMGY) signature 85 97 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr3g2002 184 PRINTS High mobility group protein (HMGY) signature 111 122 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr3g2002 184 PRINTS High mobility group protein (HMGY) signature 124 143 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mtr3g2002 184 PANTHER HISTONE H1 3 177 - -
Mtr3g2002 184 PANTHER HMG-Y-RELATED PROTEIN A 3 177 IPR031059 GO:0003677|GO:0005634
Mtr3g2002 184 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr3g2002 184 MobiDBLite consensus disorder prediction 77 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2002 Mtr-Chr3 33139161 33140705 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2002 - - gmx:100803968 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2673 5 34781798 34783214 Mtr3g2002 3 33139161 33140705 PCT