Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2652 ATGGCTCTGTTTTCCTCTGTTTCACTCTGCATGCTTGTTTTCTTCTCTTTCTTTTTCTTCACATGTTTCTCATCAAAACATAATAAACACCACAATGTTAACGACTCTTTCTCCCTTTCTTTCCCTCTAACCCTTTCCATAAACTCAACAACAAAAACAAACCCAATTGTCCCAAGCATTTCACCTTACAAATATTCTATGGCCCTTGTTGTGACTCTTCCCATTGGAACACCACCACAGCTTCAACAAATGGTTTTGGATACAGGAAGCCAAGTTTCATGGATTCACTGTGACAACAAAAAAGGACCACAAAAGAAACAACCTCCTACGACTTCATCGTTTGATCCTTCTCTTTCCTCTTCTTTCTTTGCTCTCCCATGTAACCACCCACTTTGTAAACCTCAAGTTCCTGATATTAGCCTTCCCACGGATTGTGATGCCAATCGATTATGTCACTATTCTTTTTCCTATACTGATGGAACTGTAGTCGAGGGAAATCTTGTTAGAGAAAATATTGCTTTATCTCCTTCCCTAACTACCCCTCCTATTATCCTCGGTTGTGCTAATCAATCCGATGATGCTAGGGGTATTTTGGGAATGAATCTTGGTCGCCTCTCCTTCCCTAATCAAGCTAAAATAACCAAATTCTCTTATTTTGTCCCTGTAAAACAAACGCAGCCTGGATCCGGTTCTCTTTACCTTGGAAATAATCCAAATTCATCGTGTTTTCGTTATGTTAAATTGTTGACTTTTAGTAAAAGTCAAAGTCAACGCATGCCGAATCTGGATCCCTTGGCCTTCACGCTTCCAATGCAAGGGATTAGCATTGGTGGAAAAAAATTGAACATTCCGCCTTCTGTTTTCAAACCGGACACTACTGGGTTTGGCCAAACCATTATTGATTCTGGATCAGAATTCTCTTACATGGTAGACAAAGCTTATAATGTGATACGGAATGAGCTAGTTAAAAAGGTTGGGTCCAAGATTAAGAAGGACTACATATACGGTGGAGTAGCAGACATTTGTTTTGATGGAGATGCAACTGAAATCGGACGCCTTGTGGGAGACATGGTGTTTGAGTTCGAGAAAGGAGTGGAGATAGTGATTCCGAAAGAGAGAGTTCTCATTGAGGTGGACGGTGGAGTCCACTGTTTTGGAATTGGAAGGGCAGAAGGATTGGGTGGAGGGGGTAACATTATTGGCAACTTCTATCAACAAAATTTATGGGTAGAGTTTGATCTGGCCAAACATAGAGTTGGTTTCCGTGGGGCTAACTGTAGCAAATCAGCTAAATATAGCACGAGAAGGGTAAATGGACTCATGTAG 1326 0.4103 MALFSSVSLCMLVFFSFFFFTCFSSKHNKHHNVNDSFSLSFPLTLSINSTTKTNPIVPSISPYKYSMALVVTLPIGTPPQLQQMVLDTGSQVSWIHCDNKKGPQKKQPPTTSSFDPSLSSSFFALPCNHPLCKPQVPDISLPTDCDANRLCHYSFSYTDGTVVEGNLVRENIALSPSLTTPPIILGCANQSDDARGILGMNLGRLSFPNQAKITKFSYFVPVKQTQPGSGSLYLGNNPNSSCFRYVKLLTFSKSQSQRMPNLDPLAFTLPMQGISIGGKKLNIPPSVFKPDTTGFGQTIIDSGSEFSYMVDKAYNVIRNELVKKVGSKIKKDYIYGGVADICFDGDATEIGRLVGDMVFEFEKGVEIVIPKERVLIEVDGGVHCFGIGRAEGLGGGGNIIGNFYQQNLWVEFDLAKHRVGFRGANCSKSAKYSTRRVNGLM* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2652 441 Gene3D Acid Proteases 236 437 IPR021109 -
Mtr5g2652 441 Gene3D Acid Proteases 45 235 IPR021109 -
Mtr5g2652 441 Pfam Xylanase inhibitor N-terminal 70 236 IPR032861 -
Mtr5g2652 441 PANTHER ASPARTYL PROTEASE-RELATED 21 429 IPR001461 GO:0004190|GO:0006508
Mtr5g2652 441 PRINTS Pepsin (A1) aspartic protease family signature 75 95 IPR001461 GO:0004190|GO:0006508
Mtr5g2652 441 PRINTS Pepsin (A1) aspartic protease family signature 298 309 IPR001461 GO:0004190|GO:0006508
Mtr5g2652 441 PRINTS Pepsin (A1) aspartic protease family signature 398 413 IPR001461 GO:0004190|GO:0006508
Mtr5g2652 441 CDD pepsin_A_like_plant 70 426 IPR034161 -
Mtr5g2652 441 Pfam Xylanase inhibitor C-terminal 267 422 IPR032799 -
Mtr5g2652 441 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 21 429 - -
Mtr5g2652 441 SUPERFAMILY Acid proteases 70 429 IPR021109 -
Mtr5g2652 441 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 84 95 IPR001969 GO:0004190|GO:0006508
Mtr5g2652 441 ProSiteProfiles Peptidase family A1 domain profile. 69 422 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2652 Mtr-Chr5 34565904 34567607 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2652 49 431 Miscellaneous Gene Families AT1G77480 26.225 1.34e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2652 - - gmx:100790706 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1984 3 32901271 32903177 Mtr5g2652 5 34565904 34567607 PCT