Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2165 ATGGAAATACTAAGGTGCTTTTCTGTTTTGAATGAAAGGAAGGTGAAAAAAAAGGTGGGGAAAGAAAAGTATTCTAAAGAGAATTTCGATACTCTACTTGCCAAACTACAACACTCGGTATCATTCACGACATGTAATTCAGAGCCGACCACTTTTGATCTTACTGTAACCAATGGTTTTCAGAAAAATTCGAGGAACAATGTTAGGGTTATGAGTCTTGAGAGTCCTGTGAAGGCTGAAGGAGGAGAATCTTATGAAGGTGGAGATGAGAATGAGAATGAAAATGAAAATTCTCCCTCAATTAAGAAGGAACTCTCACATTTATATCCCAAACTTGATGAACCTGTTGCAAGCAAAGAAAGGTATGGTCCAACAGATAACGAGCAAGCCACCAATGAGTTTGAAGATCAAAGCGATAGGTACAGCCGAAAGAGCGCTGATACAAACAATAGTGGACATGCGAGTGATCCTGGTATTGGAAAGACTGATTTCTTGGGTTCACCAAAGCTCAAGAGATCGTGCTCTAACCTTGAAAGCAGGGATGTTCGTATGCAGATAAATGAATACTTGTCTCCTTTGCAGGCACAGTCTTTTGAAGACTTTCGAGATTTATCAATAAACCCAATGGTTAATCTTAAGAGGTCTAGGTCCATGACAAGTCACTGCAGTGCTGATCGAGTAATGTTGAAACGGCATTCTTCAAGTCGAGTACTCCCGTCTGGAAGTAAAAAATTGTGGTGGAAGTTGTTCTTGTGGAGCCATAGGAACATACATAGAACATTCTCTAGAAAATCAAAACTTGTTCCTGCTACTAGTTCCTTAAGCAATCAAATAGGGTATTATTCAGACACCCTCGAACTAAAACAAATGAAGACGCTGAGACATGTGCAATCGTCTGCGTCATTTACTATGCGCTCCCCTAATAAAAGCATCAATGGTGATGATCAAAGGCAGAGCAGATTTCAAAACCAATGGTTTGCTTTTTCGACAGAGACATCTTCTTATGCGAGGGTCGATGCATGGGTCAAAGATCTTGAAATTCAGGAGCCAGTGCCGGAGGATGATCCTCTTGATGACATTGCCGGAAGCATTTCCTTCCCACCTTCTCCTGATGCCGGTAGATCAAAGATAATAAGCACTTCTCAATTGACTCATTCAAATTCCAATCTTCCGAAGGATATTTTGTTAGCCAATAGTATGGTCCAGTCTCTAAATCCAGCTTCATCGGTTGCTCACATATCCGGTGTTGGTATAAAAGCCATCCCTGTGATCTCACACTTTTCCAATCTCCGCTCAGTCAATCTGTCCAACAATTTCATAGTTACAATCTCACCAGGATGTCTACCAAAGAGTGTTCAAACACTTAATTTGTCAAGAAACAAGATTAGCACCATTGAGGGCCTCAAAGAATTGACTCGGCTGAGAGTACTTGACCTAAGTTACAACTGCATATCAAGAATTGGACAAGGTTTGTCAAGTTGTACAATTGTCAAAGAGCTATATCTTGCTGACAACAAGATAAGTGATGTTGAGGGGCTTCATAGGTTGTTTAAGCTAACAGTTCTGGACTTGAGCTTCAACAAAATCACGACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTCCAGGCACTTAATCTACTCGGAAATGCTATTCAGAGAAACATCGGTGATGAACAACTAAACAAAGCAGTATCTGGTCTACTTCCAAAGCTGGTGTACCTGAATAAACAACCCATCAAGGCTAAAAGGGCGATGCGGGAAATATTGACCGATAGTGTTGCAAAAGCTGCACTTGGGAACAGCAAGAAGCGGAGCTATGTAAAAAGATCGGTAAGCCAAGGAGGTTCAAGTTCCAGCAGAGGTCATAGAAGCAGTGCAAGTGTTGCACCGAATAGCAGGATCCGGAGAAGGAGGTGA 1929 0.4152 MEILRCFSVLNERKVKKKVGKEKYSKENFDTLLAKLQHSVSFTTCNSEPTTFDLTVTNGFQKNSRNNVRVMSLESPVKAEGGESYEGGDENENENENSPSIKKELSHLYPKLDEPVASKERYGPTDNEQATNEFEDQSDRYSRKSADTNNSGHASDPGIGKTDFLGSPKLKRSCSNLESRDVRMQINEYLSPLQAQSFEDFRDLSINPMVNLKRSRSMTSHCSADRVMLKRHSSSRVLPSGSKKLWWKLFLWSHRNIHRTFSRKSKLVPATSSLSNQIGYYSDTLELKQMKTLRHVQSSASFTMRSPNKSINGDDQRQSRFQNQWFAFSTETSSYARVDAWVKDLEIQEPVPEDDPLDDIAGSISFPPSPDAGRSKIISTSQLTHSNSNLPKDILLANSMVQSLNPASSVAHISGVGIKAIPVISHFSNLRSVNLSNNFIVTISPGCLPKSVQTLNLSRNKISTIEGLKELTRLRVLDLSYNCISRIGQGLSSCTIVKELYLADNKISDVEGLHRLFKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNAIQRNIGDEQLNKAVSGLLPKLVYLNKQPIKAKRAMREILTDSVAKAALGNSKKRSYVKRSVSQGGSSSSRGHRSSASVAPNSRIRRRR* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2165 642 MobiDBLite consensus disorder prediction 608 642 - -
Mtr5g2165 642 Pfam Leucine Rich repeat 518 530 IPR001611 GO:0005515
Mtr5g2165 642 Gene3D Ribonuclease Inhibitor 373 495 IPR032675 -
Mtr5g2165 642 ProSiteProfiles Leucine-rich repeat profile. 473 495 IPR001611 GO:0005515
Mtr5g2165 642 ProSiteProfiles Leucine-rich repeat profile. 518 539 IPR001611 GO:0005515
Mtr5g2165 642 MobiDBLite consensus disorder prediction 113 167 - -
Mtr5g2165 642 ProSiteProfiles Leucine-rich repeat profile. 451 472 IPR001611 GO:0005515
Mtr5g2165 642 Pfam Leucine rich repeat 428 482 IPR001611 GO:0005515
Mtr5g2165 642 SMART LRR_sd22_2 494 515 - -
Mtr5g2165 642 SMART LRR_sd22_2 516 537 - -
Mtr5g2165 642 SMART LRR_sd22_2 471 493 - -
Mtr5g2165 642 SMART LRR_sd22_2 449 470 - -
Mtr5g2165 642 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 641 - -
Mtr5g2165 642 MobiDBLite consensus disorder prediction 71 100 - -
Mtr5g2165 642 MobiDBLite consensus disorder prediction 609 635 - -
Mtr5g2165 642 SUPERFAMILY Outer arm dynein light chain 1 418 583 - -
Mtr5g2165 642 SMART LRR_typ_2 471 494 IPR003591 -
Mtr5g2165 642 SMART LRR_typ_2 427 450 IPR003591 -
Mtr5g2165 642 SMART LRR_typ_2 516 538 IPR003591 -
Mtr5g2165 642 PANTHER NISCHARIN RELATED 4 641 - -
Mtr5g2165 642 Gene3D Ribonuclease Inhibitor 496 586 IPR032675 -
Mtr5g2165 642 ProSiteProfiles Leucine-rich repeat profile. 496 517 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2165 Mtr-Chr5 28123690 28127736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2165 422 616 Receptor kinase-like Gene Family AT5G56040 30.047 9.05e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2165 - - gmx:100810094 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2165 5 28123690 28127736 Mtr5g2165 5 28123690 28127736 ECH
Mtr5g2165 5 28123690 28127736 Mtr3g2344 3 37241656 37245284 PCT