Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2344 ATGGCTATGTGTAGATGTGTCTCTGTTTTGATTGGAAGGAAGGATAAAATCAAGGGCATTGAAGGATCTTCAAAAGGGGACCTCAAAAAGTTACATGCCAAAGTACAACACCCAACAATATCTTCGAAGAGTCGTGATATAAAGCCAGATGACACCCATGATGTTACAACCGGTGGTACCCAGATGAATTCAAGGTCCAATGTGAAAGTTCTGAGTCCCGAGATCCCTATGAAGACTGAAGTAGAGGAAGCTTATGAAGGGGAAGATGAACATGAAGATTCACCATCCATCAAGAGAGAGTTCTCTGATTTTGATCTCCAAGTTCATGAAGCTGTTGCATGCAAAGTAGGATATGACCCAGCAGGTAAAGAGATCAACTCCCCCAGTTTATATAAAAAACAAACCAACATTCAATTGGAAGACGAAGATGATAAATACGACAAAAACAGTGTTGATTTGATCCAAAGTGGGCATGTCAGTGATCCTGGGATGGGCAAGCCTGACTTCTGGGCTTCTCCAGAGCTCAAGCGATCTTGCTCTAACCTGGAAAGAAGGGATATATCTAGGAAGACTGTTCATCACTTTCCATCTTCAAAGTCACATTCTTTTGAGGATTTGCAGGAATTATCAGCAAATCAGATGGTTAATCTAGAGAGCCCCAGGTCTGTGATGACTCAGCGCAGTGCTGATAGAGTGATGTTGAAAAGGCGTTCGTCTAGTCAAGTTCTCCCTTCTGGAAGTAAAAAATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATTCATCAACCTTGGGTCAGCAAATCAACACAATTACATCCTGCAAGTGCTGTTTTTAATAGTCAATGCGGGTACTCTTCAGATATCCTGGAACCAAAACAAGGTAAGACATTGAGACATATGGGATCACCCTCTCATGCATCATCTTCAGGGGAGTACTTCAGCAAAAGCGGCAAGGATAAAAATATGGATAATCAAAGGTGGAGCAGATTTCACAAAGAAAATAACTTTGATTTTCGGACACAAAATCAATGGGTAGCTTTCTCAACAGAATCATCCTCCTTTAACAGAGTAGATGAGTGGGTGAAAGATCTTGAAAATCAGCAGCCACCTTCAGAGGATGATTTTGCTGATGACAATATTGGAACCACTGTCTTGCCACCTTCTCCGGATGCTGATAGATCAATGGCAAGAACCACAACTCGGTTACCTCAAAATCAAGATGCCAATCTTTCAAAGGATCTTTTGTATGCCAATAGCGTGGTGCAATCTCTGAATCCAGCCTCAACTGCAGCTCATATATCTGGTATTGGTATGAAAGTCATCCCCGCAATTACACACTTCTGCAGTCTTCGCTCAGTGAATCTGTCAAACAATTTCATAGTTCATATCACACCTGGATTTCTCCCAAAGGGTCTTCATACACTTAATTTGTCAAGAAACAAGATCAGCACTATTGAGGGCCTCCGAGAATTAACCCGATTGCGGGTACTTGACCTAAGTTATAACCGCATTTCAAGAATTGGACAAGGGCTATCAAGTTGTACACTGGTCAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGCCTACACAGGTTATTCAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCACGACAACAAAAGCACTGCGCCAGCTTGTAGCTAACTACAACTCAGTTCTGGCCTTGAATCTGCTCGGAAATCCAATTCAAAGCAACATCAGTGATGAGCAGTTGCGCAAAGCAGTTTGTGATCTTCTGCCAAAGCTAGTGTACCTGAACAAGCAATCCATCAAGCCTCAAAGGGCACGAGAGATGCTCACTGATAGTGTTGCCAAAGCTGCACTTGGAAACAGCAGCCGGACCCCCAAAAGAAGAACACTGAAGAAAGGTGGCCAAGGAGGATCAAGTTCCTCCAGTGTGCATAGAAGCAGAAGCAGTGCTAGTTTAGCCCAGAATAGCAGGCAAAGGTCAAAGAGTCAAACTAAGCATCATTAG 2019 0.4289 MAMCRCVSVLIGRKDKIKGIEGSSKGDLKKLHAKVQHPTISSKSRDIKPDDTHDVTTGGTQMNSRSNVKVLSPEIPMKTEVEEAYEGEDEHEDSPSIKREFSDFDLQVHEAVACKVGYDPAGKEINSPSLYKKQTNIQLEDEDDKYDKNSVDLIQSGHVSDPGMGKPDFWASPELKRSCSNLERRDISRKTVHHFPSSKSHSFEDLQELSANQMVNLESPRSVMTQRSADRVMLKRRSSSQVLPSGSKKLWWKLFLWSHRNIHQPWVSKSTQLHPASAVFNSQCGYSSDILEPKQGKTLRHMGSPSHASSSGEYFSKSGKDKNMDNQRWSRFHKENNFDFRTQNQWVAFSTESSSFNRVDEWVKDLENQQPPSEDDFADDNIGTTVLPPSPDADRSMARTTTRLPQNQDANLSKDLLYANSVVQSLNPASTAAHISGIGMKVIPAITHFCSLRSVNLSNNFIVHITPGFLPKGLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSSCTLVKELYLAGNKISDVEGLHRLFKLTVLDLSFNKITTTKALRQLVANYNSVLALNLLGNPIQSNISDEQLRKAVCDLLPKLVYLNKQSIKPQRAREMLTDSVAKAALGNSSRTPKRRTLKKGGQGGSSSSSVHRSRSSASLAQNSRQRSKSQTKHH* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2344 672 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Mtr3g2344 672 MobiDBLite consensus disorder prediction 622 672 - -
Mtr3g2344 672 Pfam Leucine rich repeat 451 506 IPR001611 GO:0005515
Mtr3g2344 672 SMART LRR_typ_2 493 516 IPR003591 -
Mtr3g2344 672 SMART LRR_typ_2 538 559 IPR003591 -
Mtr3g2344 672 SMART LRR_typ_2 449 471 IPR003591 -
Mtr3g2344 672 MobiDBLite consensus disorder prediction 28 66 - -
Mtr3g2344 672 ProSiteProfiles Leucine-rich repeat profile. 518 539 IPR001611 GO:0005515
Mtr3g2344 672 PANTHER NISCHARIN RELATED 4 671 - -
Mtr3g2344 672 Pfam Leucine Rich repeat 540 552 IPR001611 GO:0005515
Mtr3g2344 672 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Mtr3g2344 672 Gene3D Ribonuclease Inhibitor 514 611 IPR032675 -
Mtr3g2344 672 SUPERFAMILY Outer arm dynein light chain 1 443 607 - -
Mtr3g2344 672 SMART LRR_sd22_2 471 492 - -
Mtr3g2344 672 SMART LRR_sd22_2 493 515 - -
Mtr3g2344 672 SMART LRR_sd22_2 538 559 - -
Mtr3g2344 672 SMART LRR_sd22_2 516 537 - -
Mtr3g2344 672 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 671 - -
Mtr3g2344 672 MobiDBLite consensus disorder prediction 368 406 - -
Mtr3g2344 672 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Mtr3g2344 672 MobiDBLite consensus disorder prediction 638 664 - -
Mtr3g2344 672 MobiDBLite consensus disorder prediction 302 317 - -
Mtr3g2344 672 Gene3D Ribonuclease Inhibitor 423 513 IPR032675 -
Mtr3g2344 672 MobiDBLite consensus disorder prediction 297 321 - -
Mtr3g2344 672 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2344 Mtr-Chr3 37241656 37245284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2344 - - cam:101493323 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2344 3 37241656 37245284 Mtr3g2344 3 37241656 37245284 ECH
Mtr5g2165 5 28123690 28127736 Mtr3g2344 3 37241656 37245284 PCT