Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1638 ATGGATGCACCAATTCTCCAATTAACTTCATTCTCTCTCACAAAACCCAACACAGAAACAACATCACTTTTACCTTTACCTCATCTCATTTCTCTCATACCAAAATGCACCACTCTCAAAGAGCTCAAACAAATTCAAGCTTACACCATCAAAACCAATTACCAAAACAACACCAATGTCATCACAAAGTTCATAAATTTCTGCACCTCAAACCCCACAAAAGCTTCCATGGAACATGCACACCAACTGTTTGATCAAATTACTCAGCCAAATATTGTTCTTTTCAACACCATGGCACGTGGGTATGCTCGGTTAAATGACCCGCTTCGAGCAATGATTCTGTTTTCTCATGTGCTGTGTTATGGTCTTGTTCCAGATGATTACACATTTTCGTCGCTGCTTAAGGCTTGTTCAAAGGTTAAGGCTTTGGCGGAGGGGAAACAGCTTCATTGTTTTGCTGTGAAACTTGGGGTTAGTGATAATATGTATGTTGTTCCGACGCTTATTAATATGTATACGGCGTGTGGTGATATTGATGCTTCTAGAAGGGTTTTTGATAAGATTGATGAACCTTGTGTGGTTGCGTATAATGCAATTATTATGAGTTTGGCTAGGAATAATCGAGCTAATGAGGCATTAGCTTTGTTTAGAGAATTGCAGGAGATTGGTCTTAAGCCAACTGATGTTACCATGCTTGTTGTTCTTTCGTCGTGTGCTTTGCTTGGATCGTTGGACTTGGGGAGGTGGATGCATGAGTATGTTAAGAAGTACGGGTTTGATCGATATGTGAAGGTAAATACCACTCTTATTGATATGTATGCTAAATGTGGGAGTTTGGATGATGCTGTTAATGTGTTTAGGGACATGCCTAAGAGAGATACGCAGGCTTGGTCGGCGATAATCGTTGCCTATGCAACACACGGGGATGGTTTCCAAGCCATATCCATGTTGAATGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTGTATGCATGTAGTCACAATGGATTGGTAGAAGAAGGTTTTGAGTATTTTCATGGTATGACGAATGAGTATGGGATTGTTCCTAGTATCAAACATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGATTGGATGAAGCCTATAAATTCATAGATGAATTACCGATCAAGCCGACACCGATTCTTTGGCGAACGTTGCTATCTGCTTGTAGTACTCATGGCAATGTTGAAATGGGAAAGCGTGTGATTGAGAGGATTTTTGAATTGGATGATTCCCATGGTGGGGATTATGTTATTTTCTCGAACTTGTGTGCAAGATATGGAAAATGGGATGACGTGAACCACCTACGGAAAACAATGATAGATAAAGGAGCGGTGAAAATTCCTGGTTGCAGCTCTATAGAGGTCAACAATGTTGTGCATGAGTTCTTTGCTGGGGAGGGAGTTCACTCGACTTCTACCACGTTGCACCGTGCACTTGACGAGTTGGTAAAGGAATTGAAGTCTGCTGGGTATGTACCTGATACATCACTAGTCTTTTATGCAGACATGGAAGATGAAGAGAAAGAAATTATTCTTCGATATCACAGTGAAAAATTGGCCATTACGTTTGGACTACTGAATACACCACCTGGAACAACAATTCGTGTGGTCAAGAACCTTAGAGTATGTGGAGATTGCCATAATGCCGCTAAATTTATATCATTGATTTTTGGTAGGCAAATTATTCTTAGAGATGTTCAGCGATTTCACCATTTCAAAGATGGGAAATGCTCTTGTGGTGATTACTGGTAG 1806 0.4048 MDAPILQLTSFSLTKPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRAMILFSHVLCYGLVPDDYTFSSLLKACSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1638 601 Pfam E motif 410 472 IPR046848 -
Mtr5g1638 601 Gene3D Tetratricopeptide repeat domain 263 495 IPR011990 GO:0005515
Mtr5g1638 601 Pfam PPR repeat 267 292 IPR002885 -
Mtr5g1638 601 Pfam PPR repeat 368 391 IPR002885 -
Mtr5g1638 601 Pfam DYW family of nucleic acid deaminases 508 601 IPR032867 GO:0008270
Mtr5g1638 601 PANTHER BNAA02G26650D PROTEIN 21 587 - -
Mtr5g1638 601 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 587 - -
Mtr5g1638 601 Gene3D Tetratricopeptide repeat domain 35 170 IPR011990 GO:0005515
Mtr5g1638 601 Gene3D Tetratricopeptide repeat domain 171 260 IPR011990 GO:0005515
Mtr5g1638 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Mtr5g1638 601 Pfam PPR repeat family 191 238 IPR002885 -
Mtr5g1638 601 Pfam PPR repeat family 293 339 IPR002885 -
Mtr5g1638 601 Pfam PPR repeat family 90 138 IPR002885 -
Mtr5g1638 601 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Mtr5g1638 601 TIGRFAM PPR: pentatricopeptide repeat domain 296 329 IPR002885 -
Mtr5g1638 601 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Mtr5g1638 601 TIGRFAM PPR: pentatricopeptide repeat domain 267 293 IPR002885 -
Mtr5g1638 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 125 IPR002885 -
Mtr5g1638 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1638 Mtr-Chr5 17915792 17918254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1638 29 601 Glycoside Hydrolase AT3G49170 38.038 5.41e-140 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1638 - - gmx:100817794 1021.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1638 5 17915792 17918254 Mtr5g1638 5 17915792 17918254 ECH
Mtr5g1638 5 17915792 17918254 Mtr4g3930 4 53054543 53057006 PCT