Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3930 ATGGCGCCAGTTTGGTCCTCGTGCTCAATCAATCTCAAATCACCCTCTTATTTCACTTCCCCCATTGCCATTGCTATTGCCATTCATCTCCGTCACTACAATACAACAATCCCTCAACCATATCAACATCACCCACAAAAACTCATTTCATTTTTCAACCTAAACCACAAAGAATCGATAATTTCTATCATAAAATCTATTAACCATACCACCCATTTACTCCAAATTCATGCTCACATTCTCACAACAACCCTCATTCAAGACTCTTCTGTTTCTCATCACTTCTTATGCCGCGTTGCACTCTCTGGCCCATTACAAAACCCCAACTATTCTCTTCGTTTCTTTCAGCAAATCAACCCTCCCTTTGTTTCCCACTATAACACCATGATCAGAGCTTATTCCTTCAGCGAATCACCTCAAAAATCTCTTTTTTTATACCGAGATATGCGAAGAATAGGCATTGCTGCGAACCCTTTAACTTCTTCATTTGTTGTTAAGTCATGTATAAGGTTTTTGTATCTTCTTGGAGGGGTTCAGGTTCATTGCAACGTCTTCAAAGACGGACATCAATCAGATACCATTTTGCTCACTGCTCTTATAGATTTGTATTCACAATGTCAGAAATGTGATGATGCATGTAAGGTGTTTGATGAGATGCCTCAGAAGGATACTGTTGCTTGGAATGTGATGATTTCTTGTTATATTAGAAATAATCGAACCCGGGATGCTTTGAGATTGTTTGATGTTATGCAGACTCAAGGGTATGGATGTGAGCCGGATGATGTTACTTGTTTGCTTCTTCTTCAAGCCTGTGCTCGTTTGAATTCGTTGGAGTTTGGCGAACGGGTTCATGGTTATATTATGGAACGGGGATATGGTGGTGCACTCAATTTGTCTAATTCTCTTATAACAATGTATTCGCGGTGTGGTTGTTTAGATAAGGCTTATGAGGTGTTTATGGGAATAAAAAACAAAAGTGTGGTTTCGTGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGATATGGGAGAGAAGCTATTGAAGCATTTGAAGAGATGCGGAGAAATGGCATTCAGCCTGATGATCATACAATCACTGGTGTCCTTTCAGCTTGCAGTCATTCTGGATTATTAGATGAGGGGATGTCGTTTTTTGACCGAATGATCTCAGAGTTTCGGGTAACTCCAGCCATCCACCATTATGGCTGCATTGTTGATCTATTGGGTCGTGCTGGCTTTGTTGATAAGGCCTACCAGCTTATTATGTCCATGGAGGTAAAGCCAGATTCCACCGTGTGGAGGACCTTGCTCGGGGCATGCAGAATTCATGGTCATGTTACACTCGGTGAACGAGTAATTGAACAGTTGATTGAATTGAAAGCTCAAGAAGCTGGAGATTATGTTTTGCTTCTGAATCTTTATTCGTCAGCTGGACATTGGGAAAAGGTAGCAGAAGTGAGAAAACTAATGAGAGAAAAGTCAATTCAAACCACACCTGGTTGTTGCACAATTGAACTGAAAGGAATTGTACATGAGTTTGTTGTGGATGATATTTCACATTCAAGAAAAATTGAAATTTATCGCACACTGGATGAGATTAATAAGCAGCTGAAGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTACATAAGATGGATGACAAAGGAAAAGGATATGCACTCTCTTATCATAGTGAAAAACTGGCTATTGCTTTTGGGGTTCTTGTTACTCCACCAGGCACGGCATTGAGAGTGGCCTCTAATCTCCGGATATGTGTTGATTGCCACAATTTTCTGAAAATGTTTTCTGCGGTTTACAACCGTGATGTAATTCTCAGAGACCATAAACGGTTTCACCAATTCCGGGGAGGACATTGCTCCTGTACTGACTATTGGTAG 1902 0.4059 MAPVWSSCSINLKSPSYFTSPIAIAIAIHLRHYNTTIPQPYQHHPQKLISFFNLNHKESIISIIKSINHTTHLLQIHAHILTTTLIQDSSVSHHFLCRVALSGPLQNPNYSLRFFQQINPPFVSHYNTMIRAYSFSESPQKSLFLYRDMRRIGIAANPLTSSFVVKSCIRFLYLLGGVQVHCNVFKDGHQSDTILLTALIDLYSQCQKCDDACKVFDEMPQKDTVAWNVMISCYIRNNRTRDALRLFDVMQTQGYGCEPDDVTCLLLLQACARLNSLEFGERVHGYIMERGYGGALNLSNSLITMYSRCGCLDKAYEVFMGIKNKSVVSWSAMISGLAVNGYGREAIEAFEEMRRNGIQPDDHTITGVLSACSHSGLLDEGMSFFDRMISEFRVTPAIHHYGCIVDLLGRAGFVDKAYQLIMSMEVKPDSTVWRTLLGACRIHGHVTLGERVIEQLIELKAQEAGDYVLLLNLYSSAGHWEKVAEVRKLMREKSIQTTPGCCTIELKGIVHEFVVDDISHSRKIEIYRTLDEINKQLKIAGYVVELSSELHKMDDKGKGYALSYHSEKLAIAFGVLVTPPGTALRVASNLRICVDCHNFLKMFSAVYNRDVILRDHKRFHQFRGGHCSCTDYW* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3930 633 Gene3D Tetratricopeptide repeat domain 299 466 IPR011990 GO:0005515
Mtr4g3930 633 Pfam PPR repeat 400 426 IPR002885 -
Mtr4g3930 633 Pfam PPR repeat 125 154 IPR002885 -
Mtr4g3930 633 TIGRFAM PPR: pentatricopeptide repeat domain 364 391 IPR002885 -
Mtr4g3930 633 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Mtr4g3930 633 TIGRFAM PPR: pentatricopeptide repeat domain 225 255 IPR002885 -
Mtr4g3930 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Mtr4g3930 633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 53 625 - -
Mtr4g3930 633 PANTHER OS08G0434000 PROTEIN 53 625 - -
Mtr4g3930 633 Gene3D Tetratricopeptide repeat domain 61 179 IPR011990 GO:0005515
Mtr4g3930 633 Gene3D Tetratricopeptide repeat domain 180 282 IPR011990 GO:0005515
Mtr4g3930 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 222 IPR002885 -
Mtr4g3930 633 Pfam PPR repeat family 325 373 IPR002885 -
Mtr4g3930 633 Pfam PPR repeat family 222 273 IPR002885 -
Mtr4g3930 633 Pfam DYW family of nucleic acid deaminases 541 633 IPR032867 GO:0008270
Mtr4g3930 633 Pfam E motif 443 505 IPR046848 -
Mtr4g3930 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3930 Mtr-Chr4 53054543 53057006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3930 59 633 Glycoside Hydrolase AT3G49170 32.131 2.71e-109 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3930 - - lja:Lj0g3v0169319.1 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3930 4 53054543 53057006 Mtr4g3930 4 53054543 53057006 ECH
Mtr5g1638 5 17915792 17918254 Mtr4g3930 4 53054543 53057006 PCT