Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0979 ATGTTCGTCAAGAAGCTCGTGGAGAAAGCTTCTATAATAAAGAAGCCGGGTGGAAATTCATCAAATGGATTAAAAGCTAGTGATGTTGATCCACGTTTGGTATTTCATCATGGTGTGCCATCAGGTGCTACCAAGTTTACCTGTGACAATATTCACAACATATTAGCTCTTTCTACCAATGATGGGAGGATTAAATTATTTGGTAAGGATAATGCTCAAGTCCTACTTGAATCTAATAAGCTGGTGCCTAGCAAGTTTTTACAGTTCATCCAGAATCAAGGCATCCTTATAAATGTCACCTCAAATAACCATATTGAGGTTTGGGACATAGACAAGAAACTGTTGTCAGACTTGTACATTGTTAAAGAAGAAATCACATCTTTTGCAGTCATTCAGCATAGCCTCTATATGTATATTGGAGTTTCTACTGGTAATATTTCAGTTTTGAAGCTTGATCAAAATTTGCATGTGGTACGGATGAGTTACACTATACCCCTCTCTGCTTCTATTGGGAATTCAACTGAAATGTTTGATGATACTGTTGTGACACACATATTGCCTCAACCAGCAGCTGAAAGTAAGAGAGTTGTCATAATCTTTAGAAATGGCCAAATAATATTATGGGATATTAGAGAAAGCAAATGCATTTTCAGAACTGGTGGAAATGTGTCACAGCAGCCACTGCATAATGAAGCAAAGAAAGTGTCTTGTGCATGTTGGGTGTGTCCTTTTGGAAGCAAAGTGGTTGTAGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATCCCTTCTCTAACCACAGGAAATAACTCAGCTTCTTATTATAGCACCAAAAACATTCCTATGTTTAAATTTAACTTAGGATATAAATCAGAAAAAATTTGCATAGGATCAGTAAAATGGATATATGCTGAAGGAAAGGCCAGTAGACTATATGTCATGGGAGCTTCTAAGTCAATGCAGGTAGTGTTGTTGAACGATCATACCGAAACTCGCACAATTAAGCTAGGACTGTATTTATCTGAATGCTGTGTTGACATGGAGATCATATCAACCACAAATGAGCAAAGCAAACATAAACAAAATTCATTGATTTTGCTTGGGAAGTCAGGCCGTGTATATCAGTATGATGATAGTTTGATTGAAAAGTATCTATTGCAAGGCCAATCTAAGTCCACTCCCTCACTGCCAAAAGAAGTTATGGTGAGGTTGCCACTTACTGATTCAGGCATCACCATATCAAAATTCATCTCCAACACCACTGATGTGTTTTATGCTGCAGATGAGTATTATAGTCAAATGATCAAAAGTTATCCACAGCTTATTCCAATTGAAACAAATCACAAAGATGGGCTTAACCTGAGTTCTGCCAACTTCACTGGATTTTCAAACATTAAAAACTTGTACATAACTGGACACCATAATGGAGCCATAACATTTTGGGATGCATCATGTCCCTTCTTCATCCCAGTTTTGCAATTAAAGCAGCAGAGTGAAAATGATCAATCTTTAAGTGGTGTACCATTGACAGAATTATATTTTGACATCAAGTCTCTTCTCCTGGTTTCTGGTGACCAGAGTGGAATGGTTCGTATATTCAGATTCAAACCCGAACCGTATGCCTCTAACAGCTTCATGTCTCTTACAGGAGGTACAAAGAATGTAATCCAGAGTGTGAAACTTGTAAAAACTATTGGTGCTGTAATTTGTATGAATATAGATCATAGCACAAGGCATCTTGGTGTTGGTTCTGATCAAGGAAATGTTTCAGTTATTAACATAGATGGTCCATCTCTGTTGTATCAAAAACACATTGCAAGTGAAATTTCTGTTGGTATCATCTATCTGCAGTTCATAACCTGCAGTGTATACGGTTTCGCAAAAAACATCTTAGTAGTCGGAACAAAGGACTCGTCTGTTCTGGTATTGGATAGTGAAACCGGAAACACACTGACCACTGGAACTGGAGCTGTTCGTCCTAAGAATCCATCTAAAGCTCTATTTATGCAGATTTTGGATGGACAGTGTGAACCAATTACAAGATCAGTTAGAAAAGATAGCTTGGATTTGAGAGAAGGGAATCATGTTGACAGTGTAACAACAAAGAATTTGTACATTTTGTTGTGTTCTGAAAAGGCTTTATATATCTATTCATTTGAGTATGCTCTACTGGGAATCAAAAAGGTGCTTTACAAAAAGAAGTTCTTTCCTTCTTCCTGTTGCTGGGCATCAACATTTTACAGCGCCTCTGATATTGGTCTCGTACTACTTTTCACCACTGGAAAAGTAGAATTAAGGTCTTTGCCAGAATTGTCTTTGATAGTGAAGACTTCAATTAGAGGTTTCACTTATTCACCTCCGAAATTAAAGTCGTTTTCTGACAGCCAGATATGTTGTTCATCCAGAGGAGACCTTGTTTTGGTGAATGGTGACCAGGAAATTTTTGTTTTCTCATTGTTGGCCCAGAGGAACATTTTCAGGCTCTTGGACTCTGTTGGCCGCATTTACAGGAAGGAAAGGATGCTATCACAAGCAGAGCTTGTTCCTAACCCGGTCATATATAAGGAAAAGAAGAGCATATTCAACTCCGTCATCAAAGATTTTACTGGCGGTAAAGAAAAGCATATACCCCTTATGGAAAAAGAAGATCCTAAAGAAAGTATCGAGGAACTCTCTGCAATATTTTCACGAGCAAATTTTTCAATGGATGCCAACAATACAGTAGATGAAAAACAGCCAGAATTAACCTTAGATGACATCGATCTGGAAGATCATAAAGAAATACGCAAAGAACAAAGCATATTAGGAGCTCTTAATAAGAAGAAATTGGCTGGCAAATTTCAGGCTCTAAAAGGAAAAGTGAGAGAGATGAAGGGCAACAACCAGAAAGCATCAGATAAGGAAGAGCAGCAAGATGAGAAAGCTGGTGCGGTCAATCAAATTAAGAAGAGATATGGATTCTCTTCGTCGTCGAACGAAACAAGGGTTGCTAAATTGGCAGAAAGCAAGCTGCGGGAAAATACAAGGAAGTTGCAGGGTGTTGAGCTACGTACCGCAGAGATGGAAAATACAGCAAAATCATTTTTATCAATGGCAAAACAAGTGCTTCAAAATGCTGAACAGGACAAACGAAGTTGA 3138 0.3821 MFVKKLVEKASIIKKPGGNSSNGLKASDVDPRLVFHHGVPSGATKFTCDNIHNILALSTNDGRIKLFGKDNAQVLLESNKLVPSKFLQFIQNQGILINVTSNNHIEVWDIDKKLLSDLYIVKEEITSFAVIQHSLYMYIGVSTGNISVLKLDQNLHVVRMSYTIPLSASIGNSTEMFDDTVVTHILPQPAAESKRVVIIFRNGQIILWDIRESKCIFRTGGNVSQQPLHNEAKKVSCACWVCPFGSKVVVGYNNGELFIWSIPSLTTGNNSASYYSTKNIPMFKFNLGYKSEKICIGSVKWIYAEGKASRLYVMGASKSMQVVLLNDHTETRTIKLGLYLSECCVDMEIISTTNEQSKHKQNSLILLGKSGRVYQYDDSLIEKYLLQGQSKSTPSLPKEVMVRLPLTDSGITISKFISNTTDVFYAADEYYSQMIKSYPQLIPIETNHKDGLNLSSANFTGFSNIKNLYITGHHNGAITFWDASCPFFIPVLQLKQQSENDQSLSGVPLTELYFDIKSLLLVSGDQSGMVRIFRFKPEPYASNSFMSLTGGTKNVIQSVKLVKTIGAVICMNIDHSTRHLGVGSDQGNVSVINIDGPSLLYQKHIASEISVGIIYLQFITCSVYGFAKNILVVGTKDSSVLVLDSETGNTLTTGTGAVRPKNPSKALFMQILDGQCEPITRSVRKDSLDLREGNHVDSVTTKNLYILLCSEKALYIYSFEYALLGIKKVLYKKKFFPSSCCWASTFYSASDIGLVLLFTTGKVELRSLPELSLIVKTSIRGFTYSPPKLKSFSDSQICCSSRGDLVLVNGDQEIFVFSLLAQRNIFRLLDSVGRIYRKERMLSQAELVPNPVIYKEKKSIFNSVIKDFTGGKEKHIPLMEKEDPKESIEELSAIFSRANFSMDANNTVDEKQPELTLDDIDLEDHKEIRKEQSILGALNKKKLAGKFQALKGKVREMKGNNQKASDKEEQQDEKAGAVNQIKKRYGFSSSSNETRVAKLAESKLRENTRKLQGVELRTAEMENTAKSFLSMAKQVLQNAEQDKRS* 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0979 1045 Gene3D - 434 669 IPR015943 GO:0005515
Mtr5g0979 1045 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1044 - -
Mtr5g0979 1045 CDD R-SNARE_STXBP5_6 979 1036 - -
Mtr5g0979 1045 Gene3D - 43 393 IPR015943 GO:0005515
Mtr5g0979 1045 MobiDBLite consensus disorder prediction 956 976 - -
Mtr5g0979 1045 SUPERFAMILY NHL repeat 564 820 - -
Mtr5g0979 1045 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1044 - -
Mtr5g0979 1045 Pfam Lethal giant larvae(Lgl) like, C-terminal 730 825 IPR013905 -
Mtr5g0979 1045 Coils Coil 947 967 - -
Mtr5g0979 1045 SUPERFAMILY WD40 repeat-like 87 601 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0979 Mtr-Chr5 9725462 9737180 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0979 - - cam:101494027 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0979 5 9725462 9737180 Mtr5g0979 5 9725462 9737180 ECH
Mtr5g0979 5 9725462 9737180 Mtr8g2310 8 33568712 33579530 PCT