Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0481 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTACTCTTTCTCAACAACAAAAACGGTCAAGAACATGATCAATATTCATTGCAACCACAACCTCCTTCTAATCAATCCAATTCCAATATAATGTTATTCAACACTGCACCTACAGGTGCTAATTCTCGAAAGAGAGTAAGAGGAAGAGAAACAGGGGCTATGCAACAATCTCAATATATGATGAATCAATTCTCTTTACAATCTCACACTCCTCATCTTATTGACCTCACTCAACTCCAAAATCATCATCATCAACAACAACAGAATCAAAACATTGTTTCTACAGGTTTAGGTTTATCCTTTGGTGATCAACAACATCAAAGACTACAATTGCTACAACAACAACAGTGTCATTCCTCTCATTTCTTGTCTCTATTGTCAAATGGTTTAGCTTCACAAATCAAACAACAAAAAGATGAAATTGACCAATTCCTTCAAGCCCAGGGAGAAGAGTTACAACGGACAATAGAAGAAAAGAGACAGAGAAACTATCGGGCGATAATAAAGACAGCAGAGGAAACGGTGGCGCGTCGATTAAGAGAAAAGGAAATTGATTTACAAAAAGCCACGCGCAGAAACGCGGAGTTAGAAGCACGCGCGGCGCATCTTAGAACCGAAGCCCAACTTTGGCAAGCAAAAGCGAAAGAACAAGAAGCAACTGCTATTTCTCTTCAAACACAACTGCATCATGCTATGATGAGCGGTGGCGCAGAAAACAGAGGTGAAAATGAATGTGGGCTATCTTGCGCCTTAGGTGTTGAGGGTCACGCCGAGGATGCGGAGTCGGGTTATATTGACCCGGAAAGGGCTGTTGTTGGGTCGGGTCCTAAATGTAGAGGGTGTGGAGAACGGGTTGCTTCGGTTGTTGTGTTGCCGTGTCGACATTTATGTGTTTGTACTGAATGTGACACACGTTTCGGTGTTTGCCCCGTTTGTTTCACTGTTAAAAATTCAACCGTTGAGGTTTATTTATCTTAG 1008 0.4187 MAVQAQYPSNVLFLNNKNGQEHDQYSLQPQPPSNQSNSNIMLFNTAPTGANSRKRVRGRETGAMQQSQYMMNQFSLQSHTPHLIDLTQLQNHHHQQQQNQNIVSTGLGLSFGDQQHQRLQLLQQQQCHSSHFLSLLSNGLASQIKQQKDEIDQFLQAQGEELQRTIEEKRQRNYRAIIKTAEETVARRLREKEIDLQKATRRNAELEARAAHLRTEAQLWQAKAKEQEATAISLQTQLHHAMMSGGAENRGENECGLSCALGVEGHAEDAESGYIDPERAVVGSGPKCRGCGERVASVVVLPCRHLCVCTECDTRFGVCPVCFTVKNSTVEVYLS* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0481 335 ProSiteProfiles Zinc finger RING-type profile. 288 322 IPR001841 -
Mtr5g0481 335 MobiDBLite consensus disorder prediction 21 60 - -
Mtr5g0481 335 Pfam Zinc finger, C3HC4 type (RING finger) 287 324 - -
Mtr5g0481 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 335 IPR013083 -
Mtr5g0481 335 MobiDBLite consensus disorder prediction 21 51 - -
Mtr5g0481 335 Coils Coil 189 230 - -
Mtr5g0481 335 PIRSF SBP1_RNase_bind 1 335 IPR017066 -
Mtr5g0481 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 334 IPR017066 -
Mtr5g0481 335 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0481 Mtr-Chr5 4410068 4412097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0481 288 324 Miscellaneous Gene Families AT2G21380 40.541 3.34e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0481 K19042 - gmx:100779548 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0481 5 4410068 4412097 Mtr4g3519 4 48913188 48914853 PCT