Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3519 ATGGCTGTTCAAGCTCAATATCCATCCAATATTCTTCTTCTTCTTAACAACAATAACAGAAATGGACAAGAAGGACAACAACCATCAGGAGCATTAGGACTATCACTTCTTGATCAAACTCATCATTCTCATAATATCCTATGCAACAACACAAGTACCAATTCTCGCAAGAGAGTAAGAGAAGGAACATCCCCTAACGTTATTAATCATTTCTCTTTACAACCTCCTCAACCTTCTCAAATTATTCATCTTTCTCAACTCCATAATCATCAACAACAAAATGTCTCCACTGGCCTTCGTTTATCATTTGATGATCAACAACAACAAAGATTACAATTACAATTACAATTACAACTTCATCAACAACAACAAGGTTGTCACTCTTCATCTTTCTCATCTCTATTACCACAAGGACTTGTTTCTCAAATCAAACAACAACACGATGAATTAGACCAATATCTTCAAACCCAGGGAGAGAATCTACGGCGGACATTGGCGGATAAAAGGCAAAAACATTACCGGGAGCTACTAAATGCGGCGGAGGAAGCGGTGGCACGCCGGTTAAGAGAGAAAGAAGTGGAATTCGCAAAAGCCACACGCAGGAACGCGGAGTTAGAAGCGCGTACGGCCCAGTTAACCATGGAAGCCCAAGTATGGCAGGCAAAAGCCCGGGCCCAAGAAGCCGCAGCAGCTTCTCTGCAAGCCCAGCTGCAACAGACAATAATGTGCCAAACCGGCGAAGATGCCGGCGGCGGTGTCTCATGCGGCGTTGAAGGACAGGCTGAGGATGCTGAATCGGCTTATATTGACCCAGATAGAGTGGTGGAAGTTGCGGCGGCGCGTGGGAAATGTAGAGGGTGTGAAAAGCGCGTGGCAACGGTGGTTGTTTTACCTTGTCGGCATTTGTGTGTTTGTACAGAATGCGATGCGCATTTCAGAGTTTGCCCTGTTTGCTTTACTCCCAAGAATTCAACCGTTGAGGTCTTTCTCTCTTAG 996 0.4488 MAVQAQYPSNILLLLNNNNRNGQEGQQPSGALGLSLLDQTHHSHNILCNNTSTNSRKRVREGTSPNVINHFSLQPPQPSQIIHLSQLHNHQQQNVSTGLRLSFDDQQQQRLQLQLQLQLHQQQQGCHSSSFSSLLPQGLVSQIKQQHDELDQYLQTQGENLRRTLADKRQKHYRELLNAAEEAVARRLREKEVEFAKATRRNAELEARTAQLTMEAQVWQAKARAQEAAAASLQAQLQQTIMCQTGEDAGGGVSCGVEGQAEDAESAYIDPDRVVEVAAARGKCRGCEKRVATVVVLPCRHLCVCTECDAHFRVCPVCFTPKNSTVEVFLS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3519 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 331 IPR013083 -
Mtr4g3519 331 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 330 - -
Mtr4g3519 331 Coils Coil 188 222 - -
Mtr4g3519 331 Pfam Zinc finger, C3HC4 type (RING finger) 282 322 - -
Mtr4g3519 331 PIRSF SBP1_RNase_bind 1 331 IPR017066 -
Mtr4g3519 331 ProSiteProfiles Zinc finger RING-type profile. 284 318 IPR001841 -
Mtr4g3519 331 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 330 IPR017066 -
Mtr4g3519 331 Coils Coil 103 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3519 Mtr-Chr4 48913188 48914853 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3519 K19042 - gmx:100788122 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0481 5 4410068 4412097 Mtr4g3519 4 48913188 48914853 PCT