Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0411 ATGGCTTCTCCTATATTTCTAGTACTACTCTGTTTCATACTCTGTTTTTCACCTTCTTCTCAAACAATTCTATTACCCTTAACACACTCAATCTCCAAAACCAAATTCAACAGTACTCACCACCTTCTCAAATCAACTTCAACCCGTTCCAAAGCTCGTTTCCACCACCAACATCACAAACACCAAACCCAAGTTTCTCTCCCTCTTGCTCCAGGTAGTGATTACACCCTCTCCTTCAACCTAGGTTCAAACCCTCCACAACTCATAACACTCTACATGGACACAGGTAGCGACCTTGTTTGGTTCCCTTGTTCACCTTTCGAATGCATTCTCTGTGAAGGAAAACCACAAACAACAAAACCAGCAAATATCACAAAACAAACACACTCTGTTTCTTGTCAATCCCCTGCATGTTCCGCAGCGCATGCATCCATGTCTTCTAGTAACCTTTGTGCTATTTCACGTTGTCCTTTAGATTACATCGAAACTTCTGATTGTTCTTCTTTTTCTTGTCCACCTTTTTACTATGCTTATGGTGATGGAAGCTTCGTAGCTAATCTGTATCAACAAACACTTTCTCTCTCTTCTCTTCATCTTCAAAACTTCACGTTTGGTTGTGCTCATACTGCACTTGCTGAACCCACCGGCGTAGCTGGTTTTGGCCGCGGAATTTTATCTCTTCCGGCACAGCTCTCTACTCTCTCACCTCATTTGGGTAATCGTTTTTCTTATTGTTTAGTTTCTCACTCTTTCGACGGTGACAGACTCCGGCGACCGAGTCCACTCATTCTCGGTCGTCACAATGACACCATAACCGGCGCCGGAGACGGAGAATCTGTTGAGTTTGTCTATACTTCCATGCTTTCAAACCCAAAGCATCCTTATTACTATTGTGTTGGACTCGCCGGAATATCAGTTGGGAAAAGAACGGTACCGGCGCCGGAGATTCTCAAAAGGGTCGATGAAAAAGGTAACGGTGGAATGGTTGTTGATTCAGGAACAACGTTTACGATGTTACCGGAGAGTTTTTACAACGCGGTGGTTAATGAGTTCGATAAACGAGTTAACCGATTTCATAAACGAGCGAGTGAGATAGAAACTAAAACGGGTCTTGGACCGTGCTATTATTTAAACGGGTTATCACAGATACCGGTGTTGAAGCTTCATTTTGTTGGGAATAATTCTGATGTGGTGTTGCCTAGGAAGAATTATTTCTATGAGTTTATGGACGGTGGCGATGGTATTAGAAGGAAAGGGAAAGTGGGGTGTATGATGTTGATGAACGGTGAAGATGAAACTGAGTTGGATGGTGGACCTGGAGCTACTCTAGGGAATTATCAACAGCAAGGGTTTGAGGTGGTTTATGATCTGGAGAAAGAGCGCGTGGGGTTCGCGAAGAAAGAGTGCGCGTTGCTTTGGGATAGTCTTAACAGTGAGAAAAACTAG 1446 0.4357 MASPIFLVLLCFILCFSPSSQTILLPLTHSISKTKFNSTHHLLKSTSTRSKARFHHQHHKHQTQVSLPLAPGSDYTLSFNLGSNPPQLITLYMDTGSDLVWFPCSPFECILCEGKPQTTKPANITKQTHSVSCQSPACSAAHASMSSSNLCAISRCPLDYIETSDCSSFSCPPFYYAYGDGSFVANLYQQTLSLSSLHLQNFTFGCAHTALAEPTGVAGFGRGILSLPAQLSTLSPHLGNRFSYCLVSHSFDGDRLRRPSPLILGRHNDTITGAGDGESVEFVYTSMLSNPKHPYYYCVGLAGISVGKRTVPAPEILKRVDEKGNGGMVVDSGTTFTMLPESFYNAVVNEFDKRVNRFHKRASEIETKTGLGPCYYLNGLSQIPVLKLHFVGNNSDVVLPRKNYFYEFMDGGDGIRRKGKVGCMMLMNGEDETELDGGPGATLGNYQQQGFEVVYDLEKERVGFAKKECALLWDSLNSEKN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0411 481 CDD pepsin_A_like_plant 75 469 IPR034161 -
Mtr5g0411 481 Gene3D Acid Proteases 57 264 IPR021109 -
Mtr5g0411 481 ProSiteProfiles Peptidase family A1 domain profile. 75 465 IPR033121 -
Mtr5g0411 481 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 478 - -
Mtr5g0411 481 Pfam Xylanase inhibitor C-terminal 297 465 IPR032799 -
Mtr5g0411 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Mtr5g0411 481 PANTHER ASPARTYL PROTEASES 4 478 IPR001461 GO:0004190|GO:0006508
Mtr5g0411 481 Gene3D Acid Proteases 272 473 IPR021109 -
Mtr5g0411 481 SUPERFAMILY Acid proteases 70 474 IPR021109 -
Mtr5g0411 481 Pfam Xylanase inhibitor N-terminal 75 249 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0411 Mtr-Chr5 3760173 3762124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0411 50 472 Miscellaneous Gene Families AT1G77480 26.889 7.25e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0411 - - gmx:100807884 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0411 5 3760173 3762124 Mtr5g0411 5 3760173 3762124 ECH
Mtr5g0411 5 3760173 3762124 Mtr4g3592 4 49648696 49650522 PCT