Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0408 ATGATGATGTCCACTGGTGACCTTCTCAACATCGAACCCGTCGAACTCAAGTTCTTATTTGAGCTCAAGAAACAGATCTCGTGTTCTCTTCAATTATCAAATAAGACAGATAGCTATGTTGCTTTCAAGGTAAAAACGACCAATCCCAGGAAGTATTGCGTTCGTCCAAACACTGGAGTTGTTTTGCCTCAATCTACATGTGAAGTTATAGTTACTATGCAAGCGCAAAAGGAAGTTCCCCCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAAAGTGTACGAGTAAATGATGGTGCTGACGCGAAGGAGATTACTCCCGAAATGTTTAACAAGGAAGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGGTATATGTCGCTCCACCTCAACCTCAATCTCCAGTCCCAGAAAGTTCTGAGGAAGGATCATCACCTAGAGGTTCTGTTACTGAAAATGGAAATGCCAATGGTTCTGACTCCACAACGGTGATGAGAGGATTTACCGAACGAAATGGGACTCCAGAAAAATCTGCAGAGGCAAAAGCTCTTATGTTAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACTAAATAGCAAGCTGCGTCAGGAACTGGACATGCTGAGACGTCAAAGCAACAAAAGTCGTGGTAATGTCTCCATGATCTTTGTCATATTAATTGGTTTACTTGGCTTAATTATGGGGTATCTCCTGAAGAAGACCTAA 732 0.4194 MMMSTGDLLNIEPVELKFLFELKKQISCSLQLSNKTDSYVAFKVKTTNPRKYCVRPNTGVVLPQSTCEVIVTMQAQKEVPPDMQCKDKFLLQSVRVNDGADAKEITPEMFNKEAGHVVEECKLRVVYVAPPQPQSPVPESSEEGSSPRGSVTENGNANGSDSTTVMRGFTERNGTPEKSAEAKALMLRLTEEKNNAIQLNSKLRQELDMLRRQSNKSRGNVSMIFVILIGLLGLIMGYLLKKT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0408 243 Coils Coil 186 220 - -
Mtr5g0408 243 MobiDBLite consensus disorder prediction 138 170 - -
Mtr5g0408 243 ProSiteProfiles Major sperm protein (MSP) domain profile. 8 128 IPR000535 -
Mtr5g0408 243 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 3 241 - -
Mtr5g0408 243 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 3 241 IPR016763 GO:0005789
Mtr5g0408 243 SUPERFAMILY PapD-like 1 143 IPR008962 -
Mtr5g0408 243 PIRSF VAMP_assoc_prot 1 242 IPR016763 GO:0005789
Mtr5g0408 243 Pfam MSP (Major sperm protein) domain 9 113 IPR000535 -
Mtr5g0408 243 Gene3D Immunoglobulins 3 132 IPR013783 -
Mtr5g0408 243 MobiDBLite consensus disorder prediction 131 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0408 Mtr-Chr5 3734487 3738292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0408 - - gmx:100798247 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0408 5 3734487 3738292 Mtr5g0408 5 3734487 3738292 ECH
Mtr5g0408 5 3734487 3738292 Mtr4g3593 4 49655918 49661203 PCT