Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0243 ATGGCGCAGGAAAGATTCATCATTGAGGTTGAAAAAGCGAAGGCAGCAACGGAGGATAAACCTTCAAGAGGACCTGCGTATCGCAGTATCTTCGCTAAGGATGGATTTCCTCCTCCTATTCCTGGTCTTGATAGTTGCTGGGATGTTTTTCGATTGTCTGTTGAGAAATATCCAAATAATCCTATGCTTGGTAGCCGAGAGATTGTGGATGGGAAGCATGGCAAGTACAAGTGGCAAACTTACAAAGAAGTATATGACATGGTGATCAAAGTCGGAAATTCTATCCGCAGCTGTGGTTATGGAGAAGGTGTAAAATGTGGTATTTATGGTGCCAATTCTGCAGAGTGGATTATGAGCATGGAGGCTTGCAATGCTCATGGACTTCATTGTGTTCCTTTATACGATACCTTAGGTTCTGGGGCCATAGAATTTATCATATCCCATGCAGAGGTCTCAATTGCATTTGCAGAAGAAAAGAAGATACCTGAGCTATTGAAGACATTTCCAAATGCAACAAAATATCTCAAGACAATTGTGAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGATTGGCAATATATTCATGGACTGAATTTTTACAATTGGGTAAAAGTCATAGTTTTGATTTACCTGTAAAGAAAAGAAGCGATATCTGTACAATAATGTATACTAGCGGAACTACTGGTGACCCCAAGGGGGTATTGATATCCAATGAGAGTATTATTACCCTCTTAGCTGGGGTGAAGCGACTATTGGAGAGTGTCAATGAAAAATTGACTGAGAAGGATGTGTACTTATCATACCTTCCTCTCGCACACATCTTTGATAGGGTCATTGAAGAGACATTTATATGGCATGGTGGTTCAATAGGCTTCTGGCGCGGGGATGTTAAACTATTAATTGAAGATCTCGGGGAGCTAAAACCAACTATTTTCTGTGCGGTACCCCGTGTACTTGATAGAGTGTACTCTGGTTTGACACAGAAAATTTCTTCTGGAGGCTTCCTGAAGAAGACATTATTCAACTTTGCTTATTCATATAAGTTGAATAACATGAAGAAAGGACAAAACCATGCAGTAGCATCTCCACTTCTTGACAAAATTGTGTTCGATAAGGTGAAGCAAGGTTTAGGGGGTAGTGTACGTCTTATTCTGTCTGGAGCAGCACCTCTATCCTTGCATGTGGAAAGTTACCTACGTGTGGTGACTTGTGCTCATGTCCTACAAGGATATGGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAACTAGATATGCTTGGAACAGTGGGTCCTCCTGTACCAAATGTGGATGCGTGCCTGGAATCTGTTCCTGAAATGGGTTACGATGCCCTTGCAAGCACGCCAAGAGGAGAAATTTGTGTAAAGGGAGATACCTTGTTTTCGGGGTACTACAAACGCGAAGATCTCACAAAAGAGGTTCTGGTTGATGGATGGTTCCATACAGGGGACATTGGAGAGTGGCAACCTAATGGAAGTATGAAGATTATTGATCGGAAGAAGAATATATTCAAGCTTTCCCAAGGAGAATATGTTGCCGTTGAAAACCTGGAGAATATTTATAGCCAAGTTCCTTCTGTTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTAACCCCAGCAAACCAGCACTTGAACATTGGGCAGAAGAAAATGGTATATCCGTGGACTTCAATTCTCTCTGTGGAGATTCTAGGGCAAAAGGTTACATACTTGATGAGCTCTCAAAGATTGGAAAGGAAAAGAAGTTGAAAGGATTTGAGTTCATAAAAGCAGTCCATCTTGACCCAGTTCCATTTGATATGGAACGTGACCTTATCACTCCAACATATAAGAAGAAGAGGCCCCAGTTGCTTAAATACTATCAGAATGTTATTGATGACATGTACAAAAGTGGAAATAAACCCCGTGCCTGA 1989 0.4143 MAQERFIIEVEKAKAATEDKPSRGPAYRSIFAKDGFPPPIPGLDSCWDVFRLSVEKYPNNPMLGSREIVDGKHGKYKWQTYKEVYDMVIKVGNSIRSCGYGEGVKCGIYGANSAEWIMSMEACNAHGLHCVPLYDTLGSGAIEFIISHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVSFGKVTPEQKQEVEKFGLAIYSWTEFLQLGKSHSFDLPVKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEKLTEKDVYLSYLPLAHIFDRVIEETFIWHGGSIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKKGQNHAVASPLLDKIVFDKVKQGLGGSVRLILSGAAPLSLHVESYLRVVTCAHVLQGYGLTETCAGTFVSLPNELDMLGTVGPPVPNVDACLESVPEMGYDALASTPRGEICVKGDTLFSGYYKREDLTKEVLVDGWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYSQVPSVESIWVYGNSFEAFLVAVVNPSKPALEHWAEENGISVDFNSLCGDSRAKGYILDELSKIGKEKKLKGFEFIKAVHLDPVPFDMERDLITPTYKKKRPQLLKYYQNVIDDMYKSGNKPRA* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0243 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 3 52 - -
Mtr5g0243 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 52 252 - -
Mtr5g0243 662 PANTHER LONG CHAIN ACYL-COA SYNTHETASE 3 254 656 - -
Mtr5g0243 662 Gene3D - 43 516 IPR042099 -
Mtr5g0243 662 Pfam AMP-binding enzyme 53 524 IPR000873 -
Mtr5g0243 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 254 656 - -
Mtr5g0243 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 52 252 - -
Mtr5g0243 662 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 52 - -
Mtr5g0243 662 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
Mtr5g0243 662 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Mtr5g0243 662 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0243 Mtr-Chr5 2212186 2221430 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0243 3 658 Acyl Lipid Metabolism Gene Families AT4G23850 75.762 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0243 K01897 - gmx:100814965 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0243 5 2212186 2221430 Mtr5g0243 5 2212186 2221430 ECH
Mtr5g0243 5 2212186 2221430 Mtr8g3546 8 46061420 46068194 PCT