Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0029 ATGAAGTTTTTGTGGCGGTTGTCAGTGTTTATGTTAGTTGGGTTTATGTTGACTGGGATGTCAACGGCGAGATTCGTGGTAGAGAAGAACAGCTTGTCGGTGACTTCACCTGATAAAATCAAAGGAAAACATGACAGTGCGATTGGTAACTTTGGGATTCCTCAATATGGTGGTAGCATGGCTGGTAATGTTGTTTATCCTAAAGATAACAATAAGGGTTGTAAAGACTTTGATGATTCTTCATCTTTCAAATCCAAACCCGGTGCTCTTCCTACCATCCTTCTCCTTGATCGTGGAAGTTGTTTCTTTGCTTTGAAGGTTTGGAATGCTCAGAAGGCTGGAGCTTCTGCGGTACTCGTTGCCGATGATATTGAGGAGCCCTTGATTACTATGGACACACCCGAAGAGGATGTCTCATCTGCTAAATATATTGAGAATATTACAATACCCTCTGCTCTTATTGGAAAAACTTTTGGTCAGAAGTTGAAGGATGCCATTAGTGGTGGGGATATGGTCAATGTTAATCTTGACTGGAGAGAGGCTGTTCCTCATCCTGATGATCGTGTCGAGTATGAGTTGTGGACCAATAGTAATGATGAGTGTGGAGTTAAATGTGATATGTTGATTGAGTTTTTGAAGGATTTCAAGGGTGCAGCGCAGATCTTAGAGAAAGGAGGTTACACTCAGTTTACACCCCATTATATAACATGGTACTGTCCTCATGCGTTTACATTGAGTAAACAGTGCAAGTCCCAATGCATAAACCATGGAAGGTATTGCGCTCCGGATCCTGAGCAGGACTTCAGCACAGGCTATGATGGGAAAGACGTGGTTGTTGAAAATTTGAGGCAGCTATGTGTTTTCAAGGTGGCAAAAGAAACTGAAAAGCCTTGGGTGTGGTGGGACTATGTCACTGATTTTCAAATTAGATGCCCGATGAAGGAGAAAAAGTACAACAAGGAATGTGGGAATGCCGTCATTAAATCTCTTGGTCTTGACATCGCAAAGATTGACAAGTGCATGGGAGATCCTGATGCCGATACTGAAAATTCCATTTTGAAAGAAGAGCAAGATGCCCAAATTGGGAAGGGATCACGCGGTGATGTTACCATATTGCCTACTCTTGTTGTCAATAACAGACAATATCGTGGTAAACTGGAGAAAGGTGCCGTTTTAAAGGCTATTTGTTCTGGATTTGAGGAAACTACTGACCCAGCTGTTTGTTTGAGCAATGATGTGGAAACAAATGAGTGCTTGACAAACAACGGTGGTTGTTGGCAGGATAAAGCAGCTAATATCACTGCATGCAAGGATACATTCCGTGGGCGAGTATGTGAATGCCCCTTGGTTGATGGTGTGCAATTCAAAGGAGACGGTTATACAACTTGTGAAGTCGGTGGACCTGGGCGTTGCAAGATCAACAATGGAGGATGTTGGCATGATGCCCGGAACGGACATGCATTTTCTGCTTGTTTGGATGATGGAGGAGTTAAATGCCAGTGTCCTACAGGGTTTAAAGGTGATGGTGTAAAAAATTGTGAAGACATTGATGAATGCAAAGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAAAACACTTGGGGCAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATCAAGGACCATGATACCTGTATAAGTAAAACTGCCAGTCAGGCAAAATCCACTTGGGCTGCTTTTTGGGTCATTTTGATTGGCTTGGGTATGATTGCTGGAGGGGGATTCCTCGTGTACAAATATAGAATCAGGCAATACATGGATTCTGAAATCAGAGCAATCATGGCACAATATATGCCCTTGGACAGCCAAGCAGAAGTTCCAAATCACGTCAATCATCAAAGAGCTTGA 1881 0.4296 MKFLWRLSVFMLVGFMLTGMSTARFVVEKNSLSVTSPDKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNNKGCKDFDDSSSFKSKPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKTFGQKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVVENLRQLCVFKVAKETEKPWVWWDYVTDFQIRCPMKEKKYNKECGNAVIKSLGLDIAKIDKCMGDPDADTENSILKEEQDAQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLKAICSGFEETTDPAVCLSNDVETNECLTNNGGCWQDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEVGGPGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPTGFKGDGVKNCEDIDECKEKKACQCPECSCKNTWGSYDCSCSGDLLYIKDHDTCISKTASQAKSTWAAFWVILIGLGMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQAEVPNHVNHQRA* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0029 626 Gene3D Laminin 469 519 - -
Mtr5g0029 626 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 605 - -
Mtr5g0029 626 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 14 605 - -
Mtr5g0029 626 Gene3D - 22 185 - -
Mtr5g0029 626 ProSitePatterns EGF-like domain signature 2. 499 513 IPR000742 -
Mtr5g0029 626 Pfam Complement Clr-like EGF-like 498 518 IPR026823 -
Mtr5g0029 626 SMART egfca_6 515 557 IPR001881 GO:0005509
Mtr5g0029 626 CDD PA_VSR 50 176 - -
Mtr5g0029 626 SUPERFAMILY PA domain 43 169 IPR046450 -
Mtr5g0029 626 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Mtr5g0029 626 CDD EGF_CA 515 543 - -
Mtr5g0029 626 Gene3D Laminin 520 557 - -
Mtr5g0029 626 Pfam PA domain 61 162 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0029 Mtr-Chr5 292794 297071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0029 23 626 Miscellaneous Gene Families AT2G14740 84.463 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0029 - - gmx:100820115 1172.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0029 5 292794 297071 Mtr1g4022 1 51828773 51835389 PCT