Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g4022 ATGAAGATTCGAAGTTCTTCTTCAATGGGTTTATTGTTAGGGTTTCTGTTACTATCGTTGACGCCTTCATCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGAGGGTGACTTCACCGGATAGTATCAAGGGAACATACGATAGTGCGATTGGTAACTTTGGGATTCCTCAATACGGTGGTAGCATGGCTGGGAACGTTGTGTATCCAAAGGATAATCAAAAGGGTTGTAAAGAGTTTGATGAGTCTGGGATTTCCTTTAAATCTAAGCCTGGTGCTCTTCCCACTATTGTTTTGCTCGATCGTGGAAGTTGCTTTTTTGCTTTGAAAGTGTGGAATGCCCAGAAGGCTGGAGCTTCTTCTGTTCTTGTTGCGGATGATATTGAAGAAAAATTAATAACCATGGACACACCTGAGGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCATCGGCTCTCATTGAAAAGAATTTTGGTGAAAAATTAAAGAAAGCCATAAGTGGTGGGGATATGGTTAACGTAAATCTTGATTGGAGAGAGGCCGTCCCTCACCCAGATGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGCGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTAGAGAAAGGTGGTTATGCCCAGTTTACACCCCACTATATTACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATATTGTGCCCCAGATCCTGAGCAAGATTTCAGCACTGGTTATGATGGGAAAGATGTGGTTATTGAAAATTTGAGGCAGTTATGTGTTTTCAAGGTTGCAAATGAAACCAAAAAGCCCTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAATAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGTCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAGATGCCGATTCTGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGGAAGGGATCACGAGGTGACGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAATGAATGCTTGGAGAACAACGGTGGTTGTTGGAAGGATAAAGCAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGGCGAGTATGTGAATGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGTGAAGCTAGTGGACCTGGAAGGTGCAAGATAAACAATGGAGGTTGTTGGCATGAAGCTCGGAATGGACATGCATTTTCTGCTTGTTCGGATAATGGAGCGGTTAAATGCGAGTGTCCTGCAGGGTTTAAAGGTGACGGTGTTAAAAATTGTGCAGACATTGATGAATGCAAGGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGAAGCTATAACTGCAGTTGCAGTGGGGATCTTCTGTATATCAGGGACCATGATGCATGCATAAGTAAAACTGCCAGTCAGGAAGGAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAGTCGGCTTAGTTCTGGCCGCTTCAGGGGCATACCTTGTCTACAAATATAGAATTAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCTCAGTATATGCCCTTGGACAGCCAATCAGAAGTTGTAAATCATGTCAACGATGAAAGAGCATGA 1899 0.4271 MKIRSSSSMGLLLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVYPKDNQKGCKEFDESGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASSVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKNFGEKLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYAQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSEVETNECLENNGGCWKDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGAVKCECPAGFKGDGVKNCADIDECKEKKACQCPECSCKNTWGSYNCSCSGDLLYIRDHDACISKTASQEGGKSAWAAFWVIVVGLVLAASGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHVNDERA* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g4022 632 Gene3D - 25 189 - -
Mtr1g4022 632 Gene3D Laminin 473 553 - -
Mtr1g4022 632 Pfam Complement Clr-like EGF-like 502 522 IPR026823 -
Mtr1g4022 632 MobiDBLite consensus disorder prediction 349 369 - -
Mtr1g4022 632 SUPERFAMILY PA domain 56 173 IPR046450 -
Mtr1g4022 632 Gene3D Laminin 412 468 - -
Mtr1g4022 632 CDD PA_VSR 53 180 - -
Mtr1g4022 632 ProSitePatterns Calcium-binding EGF-like domain signature. 519 545 IPR018097 GO:0005509
Mtr1g4022 632 MobiDBLite consensus disorder prediction 349 366 - -
Mtr1g4022 632 CDD EGF_CA 519 547 - -
Mtr1g4022 632 PANTHER VACUOLAR-SORTING RECEPTOR-LIKE PROTEIN 15 611 - -
Mtr1g4022 632 Pfam PA domain 64 166 IPR003137 -
Mtr1g4022 632 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 611 - -
Mtr1g4022 632 SMART egfca_6 519 561 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g4022 Mtr-Chr1 51828773 51835389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g4022 26 632 Miscellaneous Gene Families AT2G14740 84.514 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g4022 - - gmx:100803958 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g4022 1 51828773 51835389 Mtr1g4022 1 51828773 51835389 ECH
Mtr5g0029 5 292794 297071 Mtr1g4022 1 51828773 51835389 PCT