Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4684 ATGATGTACGAACAGCAGCAACGGTTACAGCAGACACCGGTGAGGAACAAATATAACAATTCGATAGAAGAGGAAGAGAGGCTTGAAATAGTTGATTTGAGTGGCATGTCATTGGAGTCTCTTCCCAATCCTTCTCTTAATTTAGCTACCATTTGTAAGTTGGATCTCTCCAACAACAATCTTCAGAATATTCCGGAGTCGTTAACAGCAAGACTGCTGAACATGGTAGTGTTGGACGTGCACTCAAACCAGCTTAGGTCTCTCCCAAACTCCATTGGTTGCCTCTCTAGGCTCAAGCTTTTGAATGTCTCCGGCAACCTCATTCATACCCTTCCCAAAACAATTGAGAATTGCAGAGCCTTAGAAGATTTGAATCTAAATTTCAACAAGTTGAGCCAACTACCAGACACAATAGGGTATGAGCTAATAAACCTAAAAAAATTATCAGTCAACTCTAACAAGCTGATCTTCCTTCCACGCTCCACATCTCACCTCACATCTCTAAAGGTTTTAGACGCAAGACTGAACTGTCTTAGGTCTCTTCCGGAGGATCTTGAGAATCTCATCAACCTTGAAATCCTAAATGTGAGTCAGAACTTTCAGTATTTGACTTCTATTCCATACTCAGTAGGACTTCTCTTGTCCCTCACTGAACTTGATGTTAGCTACAATAAGATCAGGTCCTTGCCTGATTCCATTGGTTGTCTTAACAAGCTTCAAAAGTTGAGTGTGGAAGGGAACCCTCTCACTTCACCACCACCAGAAGTCGTAGAGAGGGGATTGCATATAGTGAAGGAGTACTTGTGCAACAAGATGAATGCTGGTCATCAAAGCCCAACAAAGAAGAAGTCTTGGGTTGGAAGGTTGGTCAAGTATGGAACATTCAATGTTAGAAGTGGAGCTCGTGAAGAACATGAGGCTTTCATCCTCCCCGAGTATAATCGTTCAATCGATGGACTTGCTTCTCCCCGTCATATGGGGATGTTTTCACCTCGTCGCCTCTTCTCCCCTCGTAATTACTTCAGCAACTGA 1032 0.4302 MMYEQQQRLQQTPVRNKYNNSIEEEERLEIVDLSGMSLESLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRSLPNSIGCLSRLKLLNVSGNLIHTLPKTIENCRALEDLNLNFNKLSQLPDTIGYELINLKKLSVNSNKLIFLPRSTSHLTSLKVLDARLNCLRSLPEDLENLINLEILNVSQNFQYLTSIPYSVGLLLSLTELDVSYNKIRSLPDSIGCLNKLQKLSVEGNPLTSPPPEVVERGLHIVKEYLCNKMNAGHQSPTKKKSWVGRLVKYGTFNVRSGAREEHEAFILPEYNRSIDGLASPRHMGMFSPRRLFSPRNYFSN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4684 343 ProSiteProfiles Leucine-rich repeat profile. 215 236 IPR001611 GO:0005515
Mtr4g4684 343 ProSiteProfiles Leucine-rich repeat profile. 50 71 IPR001611 GO:0005515
Mtr4g4684 343 SUPERFAMILY L domain-like 27 257 - -
Mtr4g4684 343 SMART LRR_typ_2 213 235 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 236 259 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 72 94 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 95 118 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 48 71 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 119 141 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 142 164 IPR003591 -
Mtr4g4684 343 SMART LRR_typ_2 165 188 IPR003591 -
Mtr4g4684 343 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 13 336 - -
Mtr4g4684 343 Pfam Leucine rich repeat 120 174 IPR001611 GO:0005515
Mtr4g4684 343 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Mtr4g4684 343 Pfam Leucine rich repeat 53 108 IPR001611 GO:0005515
Mtr4g4684 343 SMART LRR_bac_2 142 161 - -
Mtr4g4684 343 SMART LRR_bac_2 95 114 - -
Mtr4g4684 343 SMART LRR_bac_2 118 137 - -
Mtr4g4684 343 SMART LRR_bac_2 165 184 - -
Mtr4g4684 343 SMART LRR_bac_2 213 232 - -
Mtr4g4684 343 SMART LRR_bac_2 72 91 - -
Mtr4g4684 343 SMART LRR_bac_2 188 209 - -
Mtr4g4684 343 SMART LRR_bac_2 48 67 - -
Mtr4g4684 343 PANTHER LEUCINE-RICH REPEAT-CONTAINING 13 336 - -
Mtr4g4684 343 Gene3D Ribonuclease Inhibitor 2 140 IPR032675 -
Mtr4g4684 343 Gene3D Ribonuclease Inhibitor 141 268 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4684 Mtr-Chr4 60870721 60874154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4684 49 242 Receptor kinase-like Gene Family AT4G13920 33.990 5.91e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4684 - - cam:101513208 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4684 4 60870721 60874154 Mtr4g4684 4 60870721 60874154 ECH
Mtr4g4684 4 60870721 60874154 Mtr2g1519 2 16857432 16860814 PCT