LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g4673	ATGACAAATAAAATAATACTTATTAACCTTCTTCTCATTACTTTTTTGGTAGAAGCCTCTGCTGCTAGTAATTTTAATCAATACTTTGATATAACATGGGGTGATGGTCGTGGCAAAATCCTCAACAACGGACAACTTCTTACTTTGTCTTTGGACAAAGCATCTGGCTCTGGATTTCGTTCCAAAAATGAGTACTTGTTTGGAAAAATTGACATGCAACTAAAGCTTGTGCCCGGTAACTCTGCTGGCACAGTCACAACATATTATCTATCTTCTCTTGGTGATGCTCATGATGAAATAGATTTTGAATTTTTGGGTAACTTAAGTGGTGATCCTTATATTGTTCATACAAACATTTATGCACAAGGGAAAGGAAATAAAGAACAACAATTCTATTTGTGGTTCGACCCCACCAAGGACTTTCACACTTATTCCATTCTTTGGAATCCTCAAAGCATCATATTTTCTGTGGATGGGACTCCATTAAGGGAATTCAAGAATTTGGAATCAAAAGGTATTCCTTTTCCTAAAAGCCAAGCAATGAGTATATATTCAAGTCTTTGGGATGCAGATAATTGGGCCACAAGGGGAGGTCTAGCGAAAACTGATTGGTCCCAAGCCCCATTCACTGCTTCATATGGAAACTTCAACATTCAAGCTTGTGTTTGGACTTCTTCAGGTTCCTCTTGCTCTTCCAAGAATCCATCTTCAAATCACTCATGGATGAAACAATCCTTAGATTCTACAGGACAAGCTAGGATTCAATGGGTGCAAAAGAATTACATGATTTACAATTATTGCACTGATACTAAGCGATTTCCTCAAGGCCTCCCTCCTGAATGCTCACTTGCATGA	855	0.3813	MTNKIILINLLLITFLVEASAASNFNQYFDITWGDGRGKILNNGQLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTTYYLSSLGDAHDEIDFEFLGNLSGDPYIVHTNIYAQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPLREFKNLESKGIPFPKSQAMSIYSSLWDADNWATRGGLAKTDWSQAPFTASYGNFNIQACVWTSSGSSCSSKNPSSNHSWMKQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECSLA*	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g4673	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	4	283	-	-
	Mtr4g4673	284	PRINTS	Glycosyl hydrolase family 16 signature	57	75	IPR008264	GO:0004553\|GO:0005975
	Mtr4g4673	284	PRINTS	Glycosyl hydrolase family 16 signature	115	128	IPR008264	GO:0004553\|GO:0005975
	Mtr4g4673	284	PRINTS	Glycosyl hydrolase family 16 signature	133	150	IPR008264	GO:0004553\|GO:0005975
	Mtr4g4673	284	PIRSF	EndGlu_transf	1	284	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mtr4g4673	284	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	1	213	IPR000757	GO:0004553\|GO:0005975
	Mtr4g4673	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	4	283	IPR044791	GO:0004553
	Mtr4g4673	284	CDD	GH16_XET	21	281	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mtr4g4673	284	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	237	281	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Mtr4g4673	284	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	99	109	IPR008263	GO:0004553\|GO:0005975
	Mtr4g4673	284	Pfam	Glycosyl hydrolases family 16	26	205	IPR000757	GO:0004553\|GO:0005975
	Mtr4g4673	284	Gene3D	-	12	283	-	-
	Mtr4g4673	284	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	283	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g4673	Mtr-Chr4	60733853	60735104	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g4673	11	284	Glycoside Hydrolase	AT5G57560	68.478	1.31e-146	410

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g4673	K14504		-	gmx:100807063	488.034

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g4673	4	60733853	60735104	Mtr2g1531	2	17035260	17037642	PCT