LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr2g1531	ATGAAATTTAAGGGTGATATTGGTTTATTCCTCCTTCTTGTTGCCACTTTTTTGGTGTATGCATCGGCTGGTAATTTTATGAAAGATTTTGAAATAACATGGGGTGAGAGTCGTGCCAAAGTCCTTGAAAATGGGCAGAGTCTCAGCCTGACCTTAGATAAATCTTCTGGCTCTGGCTTTCGTTCCAAATATGAGTACTTGTTTGGGAAAATTGACATGCAACTCAAACTTGTAGCTGGTAACTCTGCTGGCATTGTCACAGCCTATTATCTATCTTCTCTAGGGTCTACTCATGATGAAATAGACTTTGAATTTCTTGGTAACTTGAGTGGTGATCCTTATATTCTTCATACAAACGTATTCACACAAGGGAAAGGGAATAGAGAGCAACAATTCTATTTGTGGTTTGACCCTACCAAGGACTTCCACACATATTCCCTTCGTTGGAATCCTAAAAGCATCATATTCTCTGTGGATGGAAGACCAATAAGGGAGTTCAAGAATTTAGAATCAAAAGGGGTTCCTTTTCCAAAGAACCAAGCCATGAGGATATATTCAAGTCTTTGGAATGCAGATAATTGGGCCACTAGAGGTGGGATTGTGAAAACAGATTGGACCAATGCTCCATTCATTGCCTCATATAGAAACTTCAATGCAAAAGCTTGTATTTGGACTTCTTCAGGTTCTTCTTGTTCTTCCAACAAATCTCCATTATCATCATCCACATCCCAATCATGGTTAAGAGAATCACTTGACTCAAAAGGGATACGTAAAATTCGTTGGGTGCAAAAGAATTACATGATATATAATTACTGCACTGATTATAAACGGTTCCCACAAGGCTTCCCAGCTGAATGTATTACCAGTAAACCACACAAATTGTAA	885	0.3864	MKFKGDIGLFLLLVATFLVYASAGNFMKDFEITWGESRAKVLENGQSLSLTLDKSSGSGFRSKYEYLFGKIDMQLKLVAGNSAGIVTAYYLSSLGSTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSLRWNPKSIIFSVDGRPIREFKNLESKGVPFPKNQAMRIYSSLWNADNWATRGGIVKTDWTNAPFIASYRNFNAKACIWTSSGSSCSSNKSPLSSSTSQSWLRESLDSKGIRKIRWVQKNYMIYNYCTDYKRFPQGFPAECITSKPHKL*	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr2g1531	294	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	100	110	IPR008263	GO:0004553\|GO:0005975
	Mtr2g1531	294	PIRSF	EndGlu_transf	6	291	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mtr2g1531	294	Gene3D	-	13	291	-	-
	Mtr2g1531	294	CDD	GH16_XET	21	286	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Mtr2g1531	294	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	242	286	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Mtr2g1531	294	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	11	287	-	-
	Mtr2g1531	294	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	287	IPR044791	GO:0004553
	Mtr2g1531	294	Pfam	Glycosyl hydrolases family 16	27	206	IPR000757	GO:0004553\|GO:0005975
	Mtr2g1531	294	PRINTS	Glycosyl hydrolase family 16 signature	58	76	IPR008264	GO:0004553\|GO:0005975
	Mtr2g1531	294	PRINTS	Glycosyl hydrolase family 16 signature	116	129	IPR008264	GO:0004553\|GO:0005975
	Mtr2g1531	294	PRINTS	Glycosyl hydrolase family 16 signature	134	151	IPR008264	GO:0004553\|GO:0005975
	Mtr2g1531	294	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	20	214	IPR000757	GO:0004553\|GO:0005975
	Mtr2g1531	294	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	289	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr2g1531	Mtr-Chr2	17035260	17037642	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr2g1531	9	289	Glycoside Hydrolase	AT4G25810	67.260	5.24e-145	407

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr2g1531	K14504		-	gmx:100807063	449.129

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr4g4673	4	60733853	60735104	Mtr2g1531	2	17035260	17037642	PCT