Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4656 ATGGCGAGTTTGCTTCGTACCAATTCCTTACTCACACGCTCTCTATTCGCCGCTCAGGGTGTTAAACTAGGACTATCTTCCACTTCTCAGATTTTGCACTTTTCATCCAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCCAAGAAAGATTTGGCCCTTAACCAAGCTCTTGATCAAATCACTTCTGCATTTGGAAAAGGATCGATCATGTGGCTTGGTCGCTCTGACACACCCAAAGATGTACCAGTTGTGTCTACCGGTTCTTTTGCTCTTGATATAGCACTAGGATGTGGTGGACTTCCAAAGGGGCGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCATTACATGTGATTGCAGAGGCACAGAAGCAAGGAGGCTATTGTGTCTTTGTTGATGCTGAGCATGCCCTTGATAAGACACTTGCCGAGTCTATTGGTGTGAATACTCAGAACTTGCTTCTTTCACAACCAGATTGTGGTGAACAGGCACTTAGTCTCGTGGATACCTTAATCCGTAGTGGTTCAATTGATGTCATTGTTGTTGATAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGCGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGAAAATTGAGCCACTCCTTGTCACTTTCTCAAAGTATATTGATTTTTATAAACCAGGTAAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCGTTGAAATTCTATGCCTCTGTGCGGCTTAATATTAAGAGAATAGGGTTTATCAAGAAGGGTGAAGAGGTTGTAGGAAGCCAGGTTCTTGTCAAGGTCGTGAAGAACAAGCTTGCCCCTCCTTTTAAAACTGCCGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAGAGAAGCTGAGATTATAAAGTTGAGCTTAAAATACAAATTCATCACAAAGGCCGGTTCTATGTATTACTATAACGAACATAATTTCCGCGGTGTGGATGCTCTCAAGAGTTTCCTAGCTGAGAATTATAGTGCTTTAGAAGAACTAGAAATGAAGATTAGGGAGAAGCTTCTAAAACCTGAGACAGACAAGTTACCAGAGTCAGATGGAGATGTTACGGAAGAAATTGCTACCCTTGATTCTTCTACTGACGAAGAAGCCATAGCTGTTGTAGAAGCATGA 1254 0.4314 MASLLRTNSLLTRSLFAAQGVKLGLSSTSQILHFSSKGRRRSKSDGSDSGEENMSKKDLALNQALDQITSAFGKGSIMWLGRSDTPKDVPVVSTGSFALDIALGCGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQSILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEEVVGSQVLVKVVKNKLAPPFKTAEFELQFGKGICREAEIIKLSLKYKFITKAGSMYYYNEHNFRGVDALKSFLAENYSALEELEMKIREKLLKPETDKLPESDGDVTEEIATLDSSTDEEAIAVVEA* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4656 417 SMART AAA_5 110 284 IPR003593 -
Mtr4g4656 417 MobiDBLite consensus disorder prediction 34 56 - -
Mtr4g4656 417 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 MobiDBLite consensus disorder prediction 38 55 - -
Mtr4g4656 417 Gene3D - 87 388 IPR027417 -
Mtr4g4656 417 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 407 - -
Mtr4g4656 417 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
Mtr4g4656 417 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Mtr4g4656 417 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Mtr4g4656 417 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Mtr4g4656 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 323 IPR027417 -
Mtr4g4656 417 PANTHER RECA 1 407 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Mtr4g4656 417 CDD recA 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4656 Mtr-Chr4 60540782 60546595 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4656 K03553 - gmx:100781271 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4656 4 60540782 60546595 Mtr4g4656 4 60540782 60546595 ECH
Mtr4g4656 4 60540782 60546595 Mtr2g1559 2 17414437 17422786 PCT