Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4412 ATGCTAGTGGCATTGGTCTTGCTGCTGCTGGCATTGAGCAATGAAGTGAGAGTGAATGGTGAAAGAGGTGATAGGCAATGTGGGTTCAATCCATCACTTAAGCCAAGACCACATAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGTGATGGTAAAACATTGAACACCATTGCATTTCAGAATGCCATCTTCTATCTCAAGTCGTTTGCTGATAAAGGTGGTGCTCAGCTATATGTACCCCCTGGAACATGGCTTACTCAAAGTTTCAATCTCACTAGCCATCTTACCCTCTTTTTGGAAAAAGGCGCAGTCATTATCGGATCTCAGGATCATTATAACTGGGATGTTCTTGATCCTTTACCATCTTATGGCCGAGGACTTGAAGTTCCTGGAGGAAGATATCAGAGCTTGATAAATGGATACATGTTACAGGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATCAACTTGGTGGGAATCATTTAGCTCTCATTCCTTGAACTACAGCCGTCCTCATCTGGTTGAATTAGTGGCATCTACTGATGTGGTAGTATCAAATCTGACATTCTTGAATGCCCCTGCATATAACATTCACCCAGTTTATTGCAGAAATGTACATATTCATAATATTTCAATCTTTGCTCCTCCAGAATCTCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAGGATTGTACAATTGCCACCGGCTATGATGCAATTGCCCTAAAAAGCGGTTGGGATGAGTATGGAATTGCCTACGGTAGGCCTACCGAGAATGTACACATCAGAAGGGTGCATCTACAAGCATCTTATGGCTCTACTCTTGCATTTGGTAGTGACATGTCAGGTGGAATTTCAAATGTCTTTGTAGAACATGTTCATCTCTACAACTCAAAAGGTGGGATTGAGTTCAGAACTATTAGAGGAAGAGGTGGTTATATGAAGGACATAATTTTATCAGACATAGAAATGAAGAATATATATAGAGCAATATCAGCCACAGGTTACTGTGGTTCTCATCCTGATGACAAATTTGATCCTAATGCTTTACCGCTTTTGGATCACTTTATTTTTCAAGATATAATTGGAACAAATATCACAATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCATTCACCAACATATGCTTATCCAATATAACCCTGTCTGTAAATTATGCTTCCTCCACTAGCTGGGAATGTTCAAATGTATCTGGATTTTCAGATTCTGTTCTCCCTATACCTTGTCCTGATCTTGATAGCCCTTCAAATTATTCCTCATCTTGTCTCTCCAAGTTGAGTATGAAAGGGAAAATTGCGGGGTCCGGCTCGGTGTCGATGTAA 1380 0.4065 MLVALVLLLLALSNEVRVNGERGDRQCGFNPSLKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDHYNWDVLDPLPSYGRGLEVPGGRYQSLINGYMLQDVVITGNNGTIDGMGSTWWESFSSHSLNYSRPHLVELVASTDVVVSNLTFLNAPAYNIHPVYCRNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASYGSTLAFGSDMSGGISNVFVEHVHLYNSKGGIEFRTIRGRGGYMKDIILSDIEMKNIYRAISATGYCGSHPDDKFDPNALPLLDHFIFQDIIGTNITIAGSFAGLQESPFTNICLSNITLSVNYASSTSWECSNVSGFSDSVLPIPCPDLDSPSNYSSSCLSKLSMKGKIAGSGSVSM* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4412 459 SUPERFAMILY Pectin lyase-like 32 431 IPR011050 -
Mtr4g4412 459 Gene3D - 30 422 IPR012334 -
Mtr4g4412 459 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 3 447 - -
Mtr4g4412 459 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Mtr4g4412 459 SMART pbh1 268 290 IPR006626 -
Mtr4g4412 459 SMART pbh1 296 317 IPR006626 -
Mtr4g4412 459 SMART pbh1 325 346 IPR006626 -
Mtr4g4412 459 SMART pbh1 234 255 IPR006626 -
Mtr4g4412 459 SMART pbh1 184 206 IPR006626 -
Mtr4g4412 459 SMART pbh1 207 233 IPR006626 -
Mtr4g4412 459 PANTHER PECTIN LYASE-RELATED 3 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4412 Mtr-Chr4 58118882 58122885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4412 1 436 Glycoside Hydrolase AT3G16850 60.641 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4412 - - gmx:100802343 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4412 4 58118882 58122885 Mtr4g4412 4 58118882 58122885 ECH
Mtr4g4412 4 58118882 58122885 Mtr2g1267 2 13679284 13683193 PCT